Pinezich, M. R., O’Neill, J. D., Guenthart, B. A., Kim, J., Vila, O. F., Ma, S. P., Chen, Y.-W., Hozain, A. E., Krishnan, A., Fawad, M., Cunningham, K. M., Wobma, H. M., Van Hassel, J., Snoeck, H.-W., Bacchetta, M., & Vunjak-Novakovic, G. (2025). Theranostic methodology for ex vivo donor lung rehabilitation. Med, 100644. https://doi.org/10.1016/j.medj.2025.100644

Jensen, I. J., Wells, S. B., Gras, J., & Farber, D. L. (2025). Isolation and Characterization of Human Tissue Resident Memory T cells. Current Protocols, 5(3). Portico. https://doi.org/10.1002/cpz1.70120

Sugimoto, A., Saito, Y., Wang, G., Sun, Q., Yin, C., Lee, K. H., Geng, Y., Rajbhandari, P., Hernandez, C., Steffani, M., Qie, J., Savage, T., Goyal, D. M., Ray, K. C., Neelakantan, T. V., Yin, D., Melms, J., Lehrich, B. M., Yasaka, T. M., … Schwabe, R. F. (2025). Hepatic stellate cells control liver zonation, size and functions via R-spondin 3. Nature. https://doi.org/10.1038/s41586-025-08677-w

Godinez-Macias, K. P., Chen, D., Wallis, J. L., Siegel, M. G., Adam, A., Bopp, S., Carolino, K., Coulson, L. B., Durst, G., Thathy, V., Esherick, L., Farringer, M. A., Flannery, E. L., Forte, B., Liu, T., Godoy Magalhaes, L., Gupta, A. K., Istvan, E. S., Jiang, T., … Winzeler, E. A. (2025). Revisiting the Plasmodium falciparum druggable genome using predicted structures and data mining. Npj Drug Discovery, 2(1). https://doi.org/10.1038/s44386-025-00006-5

Loffredo, L. F., Kustagi, A., Ringham, O. R., Li, F., de los Santos-Alexis, K., Saqi, A., & Arpaia, N. (2025). Heparan sulfate regulates amphiregulin programming of tissue reparative lung mesenchymal cells during influenza A virus infection in mice. Nature Communications, 16(1). https://doi.org/10.1038/s41467-025-57362-z

Pezet, M. G., Torres, J. A., Thimraj, T. A., Matkovic, I., Schrode, N., Murray, J. W., Saqi, A., Beaumont, K. G., & Snoeck, H.-W. (2025). Human respiratory airway progenitors derived from pluripotent cells generate alveolar epithelial cells and model pulmonary fibrosis. Nature Biotechnology. https://doi.org/10.1038/s41587-025-02569-0

Sharan, K., Brandt, C., Yusuf, M. A., Singh, P., Halder, N., Edwards, M. E., Mangu, S. R., Das, A., Mishra, A., Kumar, S. S., Sharma, A., Gupta, A., Liu, X. S., Guo, E. X., Monani, U. R., Ponnalagu, D., Ivanov, I. I., Lal, G., Clare, S., … Yadav, V. K. (2025). Rapid and relaying deleterious effects of a gastrointestinal pathogen, Citrobacter rodentium, on bone, an extra-intestinal organ. IScience, 28(2), 111802. https://doi.org/10.1016/j.isci.2025.111802

Gunes, M. E., Patwardhan, S., Hong, J., Manell, E., Jordache, P., Chauhan, I., Almesallmy, A., Fu, J., Sykes, M., & Weiner, J. (2025). Mucosal Mixed Lymphocyte Reaction Assay Using Intestinal Lymphocytes as a Biomarker for Intestinal Transplant Tolerance Development. Transplantation. https://doi.org/10.1097/tp.0000000000005348

Lin, X., Leung, K. S. K., Wolfe, K. F., Call, N., Bhandari, S. K., Huang, X., Lee, B. J., Tomkinson, A. E., & Zha, S. (2025). XRCC1 mediates PARP1- and PAR-dependent recruitment of PARP2 to DNA damage sites. Nucleic Acids Research, 53(4). https://doi.org/10.1093/nar/gkaf086

Olsen, T. R., Talla, P., Sagatelian, R. K., Furnari, J., Bruce, J. N., Canoll, P., Zha, S., & Sims, P. A. (2025). Scalable co-sequencing of RNA and DNA from individual nuclei. Nature Methods. https://doi.org/10.1038/s41592-024-02579-x

Fang, Y., Chung, S. S. W., Xu, L., Xue, C., Liu, X., Jiang, D., Li, R., Korogi, Y., Yuan, K., Saqi, A., Hibshoosh, H., Huang, Y., Lin, C.-S., Tsukui, T., Sheppard, D., Sun, X., & Que, J. (2025). RUNX2 promotes fibrosis via an alveolar-to-pathological fibroblast transition. Nature. https://doi.org/10.1038/s41586-024-08542-2

Kuhn, A. J., Outlaw, V. K., Marcink, T. C., Yu, Z., Mears, M. C., Cajimat, M. N., Kreitler, D. F., Cleven, P. R., Mook, J. C., Bente, D. A., Porotto, M., Gellman, S. H., & Moscona, A. (2025). Enhancing the solubility of SARS-CoV-2 inhibitors to increase future prospects for clinical development. Journal of Virology. https://doi.org/10.1128/jvi.02159-24

Rawat, M., Padalino, G., Adika, E., Okombo, J., Yeo, T., Brancale, A., Fidock, D. A., Hoffmann, K. F., & Lee, M. C. S. (2025). Quinoxaline-based anti-schistosomal compounds have potent anti-plasmodial activity. PLOS Pathogens, 21(2), e1012216. https://doi.org/10.1371/journal.ppat.1012216

Reynard, O., Iampietro, M., Dumont, C., Le Guellec, S., Durand, S., Moroso, M., Brisebard, E., Dhondt, K. P., Pelissier, R., Mathieu, C., Cabrera, M., Le Pennec, D., Amurri, L., Alabi, C., Cardinaud, S., Porotto, M., Moscona, A., Vecellio, L., & Horvat, B. (2025). Development of nebulized inhalation delivery for fusion-inhibitory lipopeptides to protect non-human primates against Nipah-Bangladesh infection. Antiviral Research, 235, 106095. https://doi.org/10.1016/j.antiviral.2025.106095

Elyaman, W., Stern, L. J., Jiang, N., Dressman, D., Bradley, P., Klatzmann, D., Bradshaw, E. M., Farber, D. L., Kent, S. C., Chizari, S., Funk, K., Devanand, D., Thakur, K. T., Raj, T., Dalahmah, O. A., Sarkis, R. A., Weiner, H. L., Shneider, N. A., & Przedborski, S. (2025). Exploring the role of T cells in Alzheimer’s and other neurodegenerative diseases: Emerging therapeutic insights from the T Cells in the Brain symposium. Alzheimer’s & Dementia. Portico. https://doi.org/10.1002/alz.14548

Riemann, L., Gutierrez, R., Odak, I., Barros-Martins, J., Roesner, L. M., Leon Lara, X., Falk, C., Schulz, T. F., Hansen, G., Werfel, T., Förster, R., Bošnjak, B., Jenniches, F., Klopp, N., Lesker, T. R., & Stangel, M. (2025). Integrative deep immune profiling of the elderly reveals systems-level signatures of aging, sex, smoking, and clinical traits. EBioMedicine, 112, 105558. https://doi.org/10.1016/j.ebiom.2025.105558

Wang, X., Zhao, D., Bi, D., Li, L., Tian, H., Yin, F., Zuo, T., Ianiro, G., Han, Y. W., Li, N., Chen, Q., & Qin, H. (2025). Fecal microbiota transplantation: transitioning from chaos and controversial realm to scientific precision era. Science Bulletin. https://doi.org/10.1016/j.scib.2025.01.029

Mougari, S., Favède, V., Predella, C., Reynard, O., Durand, S., Mazelier, M., Pizzioli, E., Decimo, D., Bovier, F. T., Lapsley, L. M., Castagna, C., Lieberman, N. A. P., Noel, G., Mathieu, C., Malissen, B., Briese, T., Greninger, A. L., Alabi, C. A., Dorrello, N. V., … Horvat, B. (2025). Intranasally administrated fusion-inhibitory lipopeptides block SARS-CoV-2 infection in mice and enable long-term protective immunity. Communications Biology, 8(1). https://doi.org/10.1038/s42003-025-07491-4

Stark, H., Ho, Q. Y., Cross, A., Alessandrini, A., Bertaina, A., Brennan, D., Busque, S., Demetris, A., Devey, L., Fruhwirth, G., Fuchs, E., Friend, P., Geissler, E., Guillonneau, C., Hester, J., Isaacs, J., Jaeckel, E., Kawai, T., Lakkis, F., … Issa, F. (2025). Meeting Report: The Sixth International Sam Strober Workshop on Clinical Immune Tolerance. Transplantation. https://doi.org/10.1097/tp.0000000000005311

Varanasi, S. K., Chen, D., Liu, Y., Johnson, M. A., Miller, C. M., Ganguly, S., Lande, K., LaPorta, M. A., Hoffmann, F. A., Mann, T. H., Teneche, M. G., Casillas, E., Mangalhara, K. C., Mathew, V., Sun, M., Jensen, I. J., Farsakoglu, Y., Chen, T., Parisi, B., … Kaech, S. M. (2025). Bile acid synthesis impedes tumor-specific T cell responses during liver cancer. Science, 387(6730), 192–201. https://doi.org/10.1126/science.adl4100

Hong, S. J., Resnick, S. J., Iketani, S., Cha, J. W., Albert, B. A., Fazekas, C. T., Chang, C.-W., Liu, H., Dagan, S., Abagyan, M. R., Fajtová, P., Culbertson, B., Brace, B., Reddem, E. R., Forouhar, F., Glickman, J. F., Balkovec, J. M., Stockwell, B. R., Shapiro, L., … Chavez, A. (2025). A multiplex method for rapidly identifying viral protease inhibitors. Molecular Systems Biology, 21(2), 158–172. https://doi.org/10.1038/s44320-024-00082-1

Liu, H., Zask, A., Forouhar, F., Iketani, S., Williams, A., Vaz, D. R., Habashi, D., Choi, K., Resnick, S. J., Hong, S. J., Lovett, D. H., Bai, T., Chavez, A., Ho, D. D., & Stockwell, B. R. (2025). Development of small molecule non-covalent coronavirus 3CL protease inhibitors from DNA-encoded chemical library screening. Nature Communications, 16(1). https://doi.org/10.1038/s41467-024-55421-5

Caron, D. P., Specht, W. L., Chen, D., Wells, S. B., Szabo, P. A., Jensen, I. J., Farber, D. L., & Sims, P. A. (2025). Multimodal hierarchical classification of CITE-seq data delineates immune cell states across lineages and tissues. Cell Reports Methods, 5(1), 100938. https://doi.org/10.1016/j.crmeth.2024.100938

Knaab, T. C., Moritz, A., Pessanha de Carvalho, L., Klein, S., Lungerich, B., Lohse, K., Kruse, L., Mombo-Ngoma, G., Orta, L., Thibaud, J. L., de Villiers, K. A., Fidock, D. A., Burckhardt, B. B., Held, J., Wittlin, S., & Kurz, T. (2024). TKK130 is a 3-Hydroxy-Propanamidine (HPA) with Potent Antimalarial In Vivo Activity and a High Barrier to Resistance. Journal of Medicinal Chemistry. https://doi.org/10.1021/acs.jmedchem.4c01465

Khosravi-Maharlooei, M., Li, H. W., & Sykes, M. (2024). T Cell Development and Responses in Human Immune System Mice. Annual Review of Immunology. https://doi.org/10.1146/annurev-immunol-082223-041615

Martinez-Vega, R., Ishengoma, D. S., Gosling, R., Rosenthal, P. J., Dondorp, A., Barnes, K. I., Nsanzabana, C., Djimde, A. A., Ochola-Oyier, L. I., Tibenderana, J., Chimumbwa, J., Golassa, L., Kapologwe, N. A., Mbacham, W. F., Kamya, M. R., Fidock, D. A., Komatsu, R., von Seidlein, L., & Dhorda, M. (2025). Regional action needed to halt antimalarial drug resistance in Africa. The Lancet, 405(10472), 7–10. https://doi.org/10.1016/s0140-6736(24)02706-5

Hagenah, L. M., Yeo, T., Schindler, K. A., Jeon, J. H., Bloxham, T. S., Small-Saunders, J. L., Mok, S., & Fidock, D. A. (2024). Plasmodium falciparum African PfCRT Mutant Isoforms Conducive to Piperaquine Resistance Are Infrequent and Impart a Major Fitness Cost. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiae617

Xie, S. C., Tai, C.-W., Morton, C. J., Ma, L., Huang, S.-C., Wittlin, S., Du, Y., Hu, Y., Dogovski, C., Salimimarand, M., Griffin, R., England, D., de la Cruz, E., Deni, I., Yeo, T., Burkhard, A. Y., Striepen, J., Schindler, K. A., Crespo, B., … Tilley, L. (2024). A potent and selective reaction hijacking inhibitor of Plasmodium falciparum tyrosine tRNA synthetase exhibits single dose oral efficacy in vivo. PLOS Pathogens, 20(12), e1012429. https://doi.org/10.1371/journal.ppat.1012429

Gomez-Gonzalez, P.-J., Gupta, A., Drought, L. G., Patel, A., Okombo, J., van der Watt, M., Walker-Gray, R., Schindler, K. A., Burkhard, A. Y., Yeo, T., Narwal, S. K., Bloxham, T. S., Flueck, C., Walker, E. M., Rey, J. A., Fairhurst, K. J., Reader, J., Park, H., Pollard, H. G., … Baker, D. A. (2024). Inhibitors of malaria parasite cyclic nucleotide phosphodiesterases block asexual blood-stage development and mosquito transmission. Science Advances, 10(49). https://doi.org/10.1126/sciadv.adq1383

Kimble, M. T., Sane, A., Reid, R. J. D., Johnson, M. J., Rothstein, R., & Symington, L. S. (2025). Repair of replication-dependent double-strand breaks differs between the leading and lagging strands. Molecular Cell, 85(1), 61-77.e6. https://doi.org/10.1016/j.molcel.2024.10.032

Bestgen, B., Jones, S., Thathy, V., Kuemmerle, A., Barcelo, C., Haouala, A., Gossen, D., Marx, M. W., Di Resta, I., Szramowska, M., Webster, R. A., Llewellyn, S., Ritacco, D. A., Yeo, T., Leroy, D., Barber, B. E., Fidock, D. A., Griffin, P., Lickliter, J., & Chalon, S. (2024). Safety, tolerability, pharmacokinetics, and antimalarial activity of MMV533: a phase 1a first-in-human, randomised, ascending dose and food effect study, and a phase 1b Plasmodium falciparum volunteer infection study. The Lancet Infectious Diseases. https://doi.org/10.1016/s1473-3099(24)00664-9

Wang, Q., Guo, Y., Schwanz, L. T., Mellis, I. A., Sun, Y., Qu, Y., Urtecho, G., Valdez, R., Stoneman, E., Gordon, A., Wang, H. H., Ho, D. D., & Liu, L. (2024). SARS-CoV-2 omicron BA.2.87.1 exhibits higher susceptibility to serum neutralization than EG.5.1 and JN.1. Emerging Microbes & Infections, 13(1). https://doi.org/10.1080/22221751.2024.2359004

Luth, M. R., Godinez-Macias, K. P., Chen, D., Okombo, J., Thathy, V., Cheng, X., Daggupati, S., Davies, H., Dhingra, S. K., Economy, J. M., Edgar, R. C. S., Gomez-Lorenzo, M. G., Istvan, E. S., Jado, J. C., LaMonte, G. M., Melillo, B., Mok, S., Narwal, S. K., Ndiaye, T., … Winzeler, E. A. (2024). Systematic in vitro evolution in Plasmodium falciparum reveals key determinants of drug resistance. Science, 386(6725). https://doi.org/10.1126/science.adk9893

FNU, T., Shi, P., Zhang, W., Chung, S. S. W., Damoci, C. B., Fang, Y., Chen, Q.-Y., Saqi, A., Huang, Y., Wu, X., Lu, C., Yang, D., Wang, T. C., & Que, J. (2024). Sympathetic Neurons Promote Small Cell Lung Cancer Through the Beta-2 Adrenergic Receptor. Cancer Discovery. https://doi.org/10.1158/2159-8290.cd-24-0718

Davis-Porada, J., George, A. B., Lam, N., Caron, D. P., Gray, J. I., Huang, J., Hwu, J., Wells, S. B., Matsumoto, R., Kubota, M., Lee, Y., Morrison-Colvin, R., Jensen, I. J., Ural, B. B., Shaabani, N., Weiskopf, D., Grifoni, A., Sette, A., Szabo, P. A., … Farber, D. L. (2024). Maintenance and functional regulation of immune memory to COVID-19 vaccines in tissues. Immunity, 57(12), 2895-2913.e8. https://doi.org/10.1016/j.immuni.2024.10.003

Cummings, M. J., Lutwama, J. J., Owor, N., Tomoiaga, A. S., Ross, J. E., Muwanga, M., Nsereko, C., Nayiga, I., Kyebambe, S., Shinyale, J., Ochar, T., Kiwubeyi, M., Nankwanga, R., Nie, K., Xie, H., Miake-Lye, S., Villagomez, B., Qi, J., Reynolds, S. J., … O’Donnell, M. R. (2024). Unsupervised Classification of the Host Response Identifies Dominant Pathobiological Signatures of Sepsis in Sub-Saharan Africa. American Journal of Respiratory and Critical Care Medicine. https://doi.org/10.1164/rccm.202407-1394oc

Handrejk, K., Schmitz, K. S., Veldhuis Kroeze, E. J. B., van Dijk, L. L. A., van Run, P., Haagmans, B., Moscona, A., Porotto, M., de Swart, R. L., de Vries, R. D., & Rissmann, M. (2024). Characterization of a SARS-CoV-2 Omicron BA.5 direct-contact transmission model in hamsters. Npj Viruses, 2(1). https://doi.org/10.1038/s44298-024-00061-1

Ferreira, L. T., Cassiano, G. C., Alvarez, L. C. S., Okombo, J., Calit, J., Fontinha, D., Gil-Iturbe, E., Coyle, R., Andrade, C. H., Sunnerhagen, P., Bargieri, D. Y., Prudêncio, M., Quick, M., Cravo, P. V., Lee, M. C. S., Fidock, D. A., & Costa, F. T. M. (2024). A novel 4-aminoquinoline chemotype with multistage antimalarial activity and lack of cross-resistance with PfCRT and PfMDR1 mutants. PLOS Pathogens, 20(10), e1012627. https://doi.org/10.1371/journal.ppat.1012627

Rijo-Ferreira, F., Ho, C.-M., & Rosenberg, A. (2024). Young investigators in parasitology meeting: building foundations and supporting early-career researchers. Trends in Parasitology, 40(12), 1063–1065. https://doi.org/10.1016/j.pt.2024.10.004

Patwardhan, S., Gunes, M. E., Manell, E., Hong, J., Jordache, P., Chauhan, I., Almesallmy, A., Mulder, H., Ekanayake-Alper, D., Hajosi, D., Ko, H. M., Shanmugarajah, K., Cetrulo, C. L., Nowak, G., Sachs, D. H., Sykes, M., & Weiner, J. (2024). Durable mixed chimerism may permit subsequent immunosuppression-free intestinal transplantation—A proof-of-principle study. American Journal of Transplantation. https://doi.org/10.1016/j.ajt.2024.10.014

Brettell, S. B., Janha, O., Begen, A., Cann, G., Sharma, S., Olaniyan, N., Yelland, T., Hole, A. J., Alam, B., Mayville, E., Gillespie, R., Capper, M., Fidock, D. A., Milligan, G., Clarke, D. J., Tobin, A. B., & Jamieson, A. G. (2024). Targeting PfCLK3 with Covalent Inhibitors: A Novel Strategy for Malaria Treatment. Journal of Medicinal Chemistry, 67(21), 18895–18910. https://doi.org/10.1021/acs.jmedchem.4c01300

Li, F., Yang, Z., Savage, T. M., Vincent, R. L., de los Santos-Alexis, K., Ahn, A., Rouanne, M., Mariuzza, D. L., Danino, T., & Arpaia, N. (2024). Programmable bacteria synergize with PD-1 blockade to overcome cancer cell–intrinsic immune resistance mechanisms. Science Immunology, 9(100). https://doi.org/10.1126/sciimmunol.adn9879

Redenti, A., Im, J., Redenti, B., Li, F., Rouanne, M., Sheng, Z., Sun, W., Gurbatri, C. R., Huang, S., Komaranchath, M., Jang, Y., Hahn, J., Ballister, E. R., Vincent, R. L., Vardoshivilli, A., Danino, T., & Arpaia, N. (2024). Probiotic neoantigen delivery vectors for precision cancer immunotherapy. Nature, 635(8038), 453–461. https://doi.org/10.1038/s41586-024-08033-4

Marcink, T. C., Zipursky, G., Sobolik, E. B., Golub, K., Herman, E., Stearns, K., Greninger, A. L., Porotto, M., & Moscona, A. (2024). How a paramyxovirus fusion/entry complex adapts to escape a neutralizing antibody. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-53082-y

Awalt, J. K., Su, W., Nguyen, W., Loi, K., Jarman, K. E., Penington, J. S., Ramesh, S., Fairhurst, K. J., Yeo, T., Park, H., Uhlemann, A.-C., Chandra Maity, B., De, N., Mukherjee, P., Chakraborty, A., Churchyard, A., Famodimu, M. T., Delves, M. J., Baum, J., … Sleebs, B. E. (2024). Exploration and characterization of the antimalarial activity of cyclopropyl carboxamides that target the mitochondrial protein, cytochrome b. European Journal of Medicinal Chemistry, 280, 116921. https://doi.org/10.1016/j.ejmech.2024.116921

Lin, X., Gupta, D., Vaitsiankova, A., Bhandari, S. K., Leung, K. S. K., Menolfi, D., Lee, B. J., Russell, H. R., Gershik, S., Huang, X., Gu, W., McKinnon, P. J., Dantzer, F., Rothenberg, E., Tomkinson, A. E., & Zha, S. (2024). Inactive Parp2 causes Tp53-dependent lethal anemia by blocking replication-associated nick ligation in erythroblasts. Molecular Cell, 84(20), 3916-3931.e7. https://doi.org/10.1016/j.molcel.2024.09.020

Stearns, K., Lampe, G., Hanan, R., Marcink, T., Niewiesk, S., Sternberg, S. H., Greninger, A. L., Porotto, M., & Moscona, A. (2024). Human parainfluenza virus 3 field strains undergo extracellular fusion protein cleavage to activate entry. MBio, 15(11). https://doi.org/10.1128/mbio.02327-24

Gu, J., Iyer, A., Wesley, B., Taglialatela, A., Leuzzi, G., Hangai, S., Decker, A., Gu, R., Klickstein, N., Shuai, Y., Jankovic, K., Parker-Burns, L., Jin, Y., Zhang, J. Y., Hong, J., Niu, X., Costa, J. A., Pezet, M. G., Chou, J., … Gaublomme, J. T. (2024). Mapping multimodal phenotypes to perturbations in cells and tissue with CRISPRmap. Nature Biotechnology. https://doi.org/10.1038/s41587-024-02386-x

Calic, P. P. S., Ashton, T. D., Mansouri, M., Loi, K., Jarman, K. E., Qiu, D., Lehane, A. M., Roy, S., Rao, G. P., Maity, B., Wittlin, S., Crespo, B., Gamo, F.-J., Deni, I., Fidock, D. A., Chowdury, M., de Koning-Ward, T. F., Cowman, A. F., Jackson, P. F., … Sleebs, B. E. (2024). Optimization of pyrazolopyridine 4-carboxamides with potent antimalarial activity for which resistance is associated with the P. falciparum transporter ABCI3. European Journal of Medicinal Chemistry, 276, 116677. https://doi.org/10.1016/j.ejmech.2024.116677

Okombo, J., & Fidock, D. A. (2024). Towards next-generation treatment options to combat Plasmodium falciparum malaria. Nature Reviews Microbiology. https://doi.org/10.1038/s41579-024-01099-x