Department of Genetics and Development

Displaying 151 - 200 of 413CSV
Papaioannou, V. E., & Behringer, R. R. (2023). Recovering a Targeted Mutation in Mice from Embryonic Stem Cell Chimeras or CRISPR–Cas Founders. Cold Spring Harbor Protocols, 2024(1), pdb.over107959. https://doi.org/10.1101/pdb.over107959
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Papaioannou, V. E., & Behringer, R. R. (2023). Necropsy Guide for the Collection of Tissues from Mice with or without Tumors. Cold Spring Harbor Protocols, 2024(1), pdb.prot108097. https://doi.org/10.1101/pdb.prot108097
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Guo, M. H., Francioli, L. C., Stenton, S. L., Goodrich, J. K., Watts, N. A., Singer-Berk, M., Groopman, E., Darnowsky, P. W., Solomonson, M., Baxter, S., Abreu, M., Salinas, C. A. A., Ahmad, T., Albert, C. M., Alföldi, J., Ardissino, D., Armean, I. M., Atzmon, G., … Banks, E. (2023). Inferring compound heterozygosity from large-scale exome sequencing data. Nature Genetics, 56(1), 152–161. https://doi.org/10.1038/s41588-023-01608-3
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Jiang, Z., Waterbury, Q. T., Malagola, E., Fu, N., Kim, W., Ochiai, Y., Wu, F., Guha, C., Shawber, C. J., Yan, K. S., & Wang, T. C. (2024). Microbial-Dependent Recruitment of Immature Myeloid Cells Promotes Intestinal Regeneration. Cellular and Molecular Gastroenterology and Hepatology, 17(3), 321–346. https://doi.org/10.1016/j.jcmgh.2023.10.007
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Karagiannis, D., Wu, W., Li, A., Hayashi, M., Chen, X., Yip, M., Mangipudy, V., Xu, X., Sánchez-Rivera, F. J., Soto-Feliciano, Y. M., Ye, J., Papagiannakopoulos, T., & Lu, C. (2024). Metabolic reprogramming by histone deacetylase inhibition preferentially targets NRF2-activated tumors. Cell Reports, 43(1), 113629. https://doi.org/10.1016/j.celrep.2023.113629
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GC-MS characterization of Polygonatum geminiflorum depicted by antibacterial efficacy of the biosynthesized silver nanoparticles using its leaf extract. (2024). Global NEST: The International Journal. https://doi.org/10.30955/gnj.005495
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Habib, M., Fatima, H., Anwar, T., Qureshi, H., Aisida, S. O., Ahmad, I., Ali, I., Al-Mohaimeed, A. M., Elshikh, M. S., Razak, S. A., & Kamal, A. (2024). Green synthesis, characterization, and application of iron and molybdenum nanoparticles and their composites for enhancing the growth of Solanum lycopersicum. Open Chemistry, 22(1). https://doi.org/10.1515/chem-2023-0196
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Pourmorady, A. D., Bashkirova, E. V., Chiariello, A. M., Belagzhal, H., Kodra, A., Duffié, R., Kahiapo, J., Monahan, K., Pulupa, J., Schieren, I., Osterhoudt, A., Dekker, J., Nicodemi, M., & Lomvardas, S. (2023). RNA-mediated symmetry breaking enables singular olfactory receptor choice. Nature, 625(7993), 181–188. https://doi.org/10.1038/s41586-023-06845-4
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Freiman, A., Rekab, A., Bergner, A. L., Pereira, E. M., Lin, Y., & Ahimaz, P. (2023). Exploring the evolving roles of clinical geneticists and genetic counselors in the era of genomic medicine. American Journal of Medical Genetics Part A, 194(4). Portico. https://doi.org/10.1002/ajmg.a.63502
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Xiao, M., Kondo, S., Nomura, M., Kato, S., Nishimura, K., Zang, W., Zhang, Y., Akashi, T., Viny, A., Shigehiro, T., Ikawa, T., Yamazaki, H., Fukumoto, M., Tanaka, A., Hayashi, Y., Koike, Y., Aoyama, Y., Ito, H., Nishikawa, H., … Inoue, D. (2023). BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-44081-6
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Olivares-Costa, M., Oyarzún, G. M., Verbel-Vergara, D., González, M. P., Arancibia, D., Andrés, M. E., & Opazo, J. C. (2023). Evolution of lysine-specific demethylase 1 and REST corepressor gene families and their molecular interaction. Communications Biology, 6(1). https://doi.org/10.1038/s42003-023-05652-x
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Temares, D. S., Liang, L. W., Bergner, A. L., Reilly, M. P., & Kalia, I. (2023). Patient experiences in receiving telegenetics care for inherited cardiovascular diseases. Journal of Community Genetics, 15(2), 119–127. https://doi.org/10.1007/s12687-023-00693-5
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Efe, G., Dunbar, K. J., Sugiura, K., Cunningham, K., Carcamo, S., Karaiskos, S., Tang, Q., Cruz-Acuña, R., Resnick-Silverman, L., Peura, J., Lu, C., Hasson, D., Klein-Szanto, A. J., Taylor, A. M., Manfredi, J. J., Prives, C., & Rustgi, A. K. (2023). p53 Gain-of-Function Mutation Induces Metastasis via BRD4-Dependent CSF-1 Expression. Cancer Discovery, 13(12), 2632–2651. https://doi.org/10.1158/2159-8290.cd-23-0601
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Meir, A., Raina, V. B., Rivera, C. E., Marie, L., Symington, L. S., & Greene, E. C. (2023). The separation pin distinguishes the pro– and anti–recombinogenic functions of Saccharomyces cerevisiae Srs2. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-43918-4
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Ahimaz, P., Bergner, A. L., Florido, M. E., Harkavy, N., & Bhattacharyya, S. (2023). Genetic counselors’ utilization of ChatGPT in professional practice: A cross‐sectional study. American Journal of Medical Genetics Part A, 194(4). Portico. https://doi.org/10.1002/ajmg.a.63493
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Al Noman, M. A., Cuellar, R. A. D., Kyzer, J. L., Chung, S. S. W., Cheryala, N., Holth, T. A. D., Maitra, S., Naqvi, T., Wong, H. L., Schönbrunn, E., Hawkinson, J. E., Wolgemuth, D. J., & Georg, G. I. (2023). Strategies for developing retinoic acid receptor alpha-selective antagonists as novel agents for male contraception. European Journal of Medicinal Chemistry, 261, 115821. https://doi.org/10.1016/j.ejmech.2023.115821
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Leeman-Neill, R. J., Song, D., Bizarro, J., Wacheul, L., Rothschild, G., Singh, S., Yang, Y., Sarode, A. Y., Gollapalli, K., Wu, L., Zhang, W., Chen, Y., Lauring, M. C., Whisenant, D. E., Bhavsar, S., Lim, J., Swerdlow, S. H., Bhagat, G., Zhao, Q., … Basu, U. (2023). Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression. Nature Genetics, 55(12), 2160–2174. https://doi.org/10.1038/s41588-023-01561-1
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Al-Zain, A. M., Nester, M. R., Ahmed, I., & Symington, L. S. (2023). Double-strand breaks induce inverted duplication chromosome rearrangements by a DNA polymerase δ-dependent mechanism. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-42640-5
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Anderson, T., Mo, J., Gagarin, E., Sherwood, D., Blumenkrantz, M., Mao, E., Leon, G., Levitz, H., Chen, H.-J., Tseng, K.-C., Fabian, P., Crump, J. G., & Smeeton, J. (2023). Ligament injury in adult zebrafish triggers ECM remodeling and cell dedifferentiation for scar-free regeneration. Npj Regenerative Medicine, 8(1). https://doi.org/10.1038/s41536-023-00329-9
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Pantalia, M., Lin, Z., Tener, S. J., Qiao, B., Tang, G., Ulgherait, M., O’Connor, R., Delventhal, R., Volpi, J., Syed, S., Itzhak, N., Canman, J. C., Fernández, M. P., & Shirasu-Hiza, M. (2023). Drosophila mutants lacking the glial neurotransmitter-modifying enzyme Ebony exhibit low neurotransmitter levels and altered behavior. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-36558-7
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Papaioannou, V. E., & Behringer, R. R. (2023). Cell Counting Techniques for Preimplantation Mouse Embryos Using Fluorescent DNA Dyes. Cold Spring Harbor Protocols, 2023(12), pdb.prot108091. https://doi.org/10.1101/pdb.prot108091
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Martino, J., Liu, Q., Vukojevic, K., Ke, J., Lim, T. Y., Khan, A., Gupta, Y., Perez, A., Yan, Z., Milo Rasouly, H., Vena, N., Lippa, N., Giordano, J. L., Saraga, M., Saraga-Babic, M., Westland, R., Bodria, M., Piaggio, G., Bendapudi, P. K., … Sanna-Cherchi, S. (2023). Mouse and human studies support DSTYK loss of function as a low-penetrance and variable expressivity risk factor for congenital urinary tract anomalies. Genetics in Medicine, 25(12), 100983. https://doi.org/10.1016/j.gim.2023.100983
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Naseem, A., Iqbal, S., Jabeen, K., Umar, A., Alharbi, K., Antar, M., Grądecka-Jakubowska, K., Gancarz, M., & Ali, I. (2023). Organic amendments improve salinity-induced osmotic and oxidative stress tolerance in Okra (Abelmoschus esculentus (L.)Moench). BMC Plant Biology, 23(1). https://doi.org/10.1186/s12870-023-04527-x
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Ali, I., Anwar, S., Ali, A., Ullah, Z., Binjawhar, D. N., Sher, H., Abdel-Hameed, U. K., Khan, M. A., Majeed, K., & Jaremko, M. (2023). Biochemical and phenological characterization of diverse wheats and their association with drought tolerance genes. BMC Plant Biology, 23(1). https://doi.org/10.1186/s12870-023-04278-9
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Austin, G. I., Park, H., Meydan, Y., Seeram, D., Sezin, T., Lou, Y. C., Firek, B. A., Morowitz, M. J., Banfield, J. F., Christiano, A. M., Pe’er, I., Uhlemann, A.-C., Shenhav, L., & Korem, T. (2023). Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data. Nature Biotechnology, 41(12), 1820–1828. https://doi.org/10.1038/s41587-023-01696-w
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Van, N. T., Zhang, K., Wigmore, R. M., Kennedy, A. I., DaSilva, C. R., Huang, J., Ambelil, M., Villagomez, J. H., O’Connor, G. J., Longman, R. S., Cao, M., Snook, A. E., Platten, M., Kasenty, G., Sigal, L. J., Prendergast, G. C., & Kim, S. V. (2023). Dietary L-Tryptophan consumption determines the number of colonic regulatory T cells and susceptibility to colitis via GPR15. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-43211-4
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Umar, A., Abid, I., Elshikh, M. S., Dufossé, L., Abdel-Azeem, A. M., & Ali, I. (2023). Agitation role (Dissolved Oxygen) in production of laccase from newly identified Ganoderma multistipitatum sp. nov. and its effect on mycelium morphology. BMC Microbiology, 23(1). https://doi.org/10.1186/s12866-023-03009-2
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Chen, X., Li, Y., Zhu, F., Xu, X., Estrella, B., Pazos, M. A., McGuire, J. T., Karagiannis, D., Sahu, V., Mustafokulov, M., Scuoppo, C., Sánchez-Rivera, F. J., Soto-Feliciano, Y. M., Pasqualucci, L., Ciccia, A., Amengual, J. E., & Lu, C. (2023). Context-defined cancer co-dependency mapping identifies a functional interplay between PRC2 and MLL-MEN1 complex in lymphoma. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-39990-5
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Cruz-Acuña, R., Kariuki, S. W., Sugiura, K., Karaiskos, S., Plaster, E. M., Loebel, C., Efe, G., Karakasheva, T., Gabre, J. T., Hu, J., Burdick, J. A., & Rustgi, A. K. (2023). Engineered hydrogel reveals contribution of matrix mechanics to esophageal adenocarcinoma and identifies matrix-activated therapeutic targets. Journal of Clinical Investigation, 133(23). https://doi.org/10.1172/jci168146
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van Soldt, B. J., Metscher, B. D., Richardson, M. K., & Cardoso, W. V. (2024). Sox9 is associated with two distinct patterning events during snake lung morphogenesis. Developmental Biology, 506, 7–19. https://doi.org/10.1016/j.ydbio.2023.11.006
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Boutin, R., Lee, H.-F., Guan, T. L., Nguyen, T. T., Huang, X. F., Waller, D. D., Lu, J., Christine Chio, I. I., Michel, R. P., Sebag, M., & Tsantrizos, Y. S. (2023). Discovery and Evaluation of C6-Substituted Pyrazolopyrimidine-Based Bisphosphonate Inhibitors of the Human Geranylgeranyl Pyrophosphate Synthase and Evaluation of Their Antitumor Efficacy in Multiple Myeloma, Pancreatic Ductal Adenocarcinoma, and Colorectal Cancer. Journal of Medicinal Chemistry, 66(23), 15776–15800. https://doi.org/10.1021/acs.jmedchem.3c01271
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Kuburich, N. A., den Hollander, P., Castaneda, M., Pietilä, M., Tang, X., Batra, H., Martínez-Peña, F., Visal, T. H., Zhou, T., Demestichas, B. R., Dontula, R. V., Liu, J. Y., Maddela, J. J., Padmanabhan, R. S., Phi, L. T. H., Rosolen, M. J., Sabapathy, T., Kumar, D., Giancotti, F. G., … Mani, S. A. (2023). Stabilizing vimentin phosphorylation inhibits stem-like cell properties and metastasis of hybrid epithelial/mesenchymal carcinomas. Cell Reports, 42(12), 113470. https://doi.org/10.1016/j.celrep.2023.113470
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Mehta, V., Dwivedi, A. R., Ludhiadch, A., Rana, V., Goel, K. K., Uniyal, P., Joshi, G., Kumar, A., & Kumar, B. (2024). A decade of USFDA-approved small molecules as anti-inflammatory agents: Recent trends and Commentaries on the “industrial” perspective. European Journal of Medicinal Chemistry, 263, 115942. https://doi.org/10.1016/j.ejmech.2023.115942
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Gaspary, A., Laureau, R., Dyatel, A., Dursuk, G., Simon, Y., & Berchowitz, L. E. (2023). Rie1 and Sgn1 form an RNA-binding complex that enforces the meiotic entry cell fate decision. Journal of Cell Biology, 222(11). https://doi.org/10.1083/jcb.202302074
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