Zuckerman Mind, Brain, and Behavior Institute

Displaying 101 - 150 of 210CSV
Soucy, J. R., Aguzzi, E. A., Cho, J., Gilhooley, M. J., Keuthan, C., Luo, Z., Monavarfeshani, A., Saleem, M. A., Wang, X.-W., Wohlschlegel, J., Fouda, A. Y., Ashok, A., Moshiri, A., Chedotal, A., Reed, A. A., Askary, A., Su, A.-J. A., La Torre, A., … Jalligampala, A. (2023). Retinal ganglion cell repopulation for vision restoration in optic neuropathy: a roadmap from the RReSTORe Consortium. Molecular Neurodegeneration, 18(1). https://doi.org/10.1186/s13024-023-00655-y
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Odean, N. N., Sanayei, M., & Shadlen, M. N. (2023). Transient Oscillations of Neural Firing Rate Associated With Routing of Evidence in a Perceptual Decision. The Journal of Neuroscience, 43(37), 6369–6383. https://doi.org/10.1523/jneurosci.2200-22.2023
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Schaffer, E. S., Mishra, N., Whiteway, M. R., Li, W., Vancura, M. B., Freedman, J., Patel, K. B., Voleti, V., Paninski, L., Hillman, E. M. C., Abbott, L. F., & Axel, R. (2023). The spatial and temporal structure of neural activity across the fly brain. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-41261-2
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Nagendra, K., Izzet, A., Judd, N. B., Zakine, R., Friedman, L., Harrison, O. J., Pontani, L.-L., Shapiro, L., Honig, B., & Brujic, J. (2023). Push-pull mechanics of E-cadherin ectodomains in biomimetic adhesions. Biophysical Journal, 122(17), 3506–3515. https://doi.org/10.1016/j.bpj.2023.07.026
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Glögl, M., Friedrich, N., Cerutti, G., Lemmin, T., Kwon, Y. D., Gorman, J., Maliqi, L., Mittl, P. R. E., Hesselman, M. C., Schmidt, D., Weber, J., Foulkes, C., Dingens, A. S., Bylund, T., Olia, A. S., Verardi, R., Reinberg, T., Baumann, N. S., Rusert, P., … Trkola, A. (2023). Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization. Nature Structural & Molecular Biology, 30(9), 1323–1336. https://doi.org/10.1038/s41594-023-01062-z
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Stine, G. M., Trautmann, E. M., Jeurissen, D., & Shadlen, M. N. (2023). A neural mechanism for terminating decisions. Neuron, 111(16), 2601-2613.e5. https://doi.org/10.1016/j.neuron.2023.05.028
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Prieur, D. S., Francius, C., Gaspar, P., Mason, C. A., & Rebsam, A. (2023). Semaphorin-6D and Plexin-A1 Act in a Non–Cell-Autonomous Manner to Position and Target Retinal Ganglion Cell Axons. The Journal of Neuroscience, 43(32), 5769–5778. https://doi.org/10.1523/jneurosci.0072-22.2023
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Sergeeva, A. P., Katsamba, P. S., Liao, J., Sampson, J. M., Bahna, F., Mannepalli, S., Morano, N. C., Shapiro, L., Friesner, R. A., & Honig, B. (2023). Free Energy Perturbation Calculations of Mutation Effects on SARS-CoV-2 RBD::ACE2 Binding Affinity. Journal of Molecular Biology, 435(15), 168187. https://doi.org/10.1016/j.jmb.2023.168187
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Wang, S., Matassoli, F., Zhang, B., Liu, T., Shen, C.-H., Bylund, T., Johnston, T., Henry, A. R., Teng, I.-T., Tripathi, P., Becker, J. E., Changela, A., Chaudhary, R., Cheng, C., Gaudinski, M., Gorman, J., Harris, D. R., Lee, M., Morano, N. C., … Kwong, P. D. (2023). HIV-1 neutralizing antibodies elicited in humans by a prefusion-stabilized envelope trimer form a reproducible class targeting fusion peptide. Cell Reports, 42(7), 112755. https://doi.org/10.1016/j.celrep.2023.112755
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Kun, E., Javan, E. M., Smith, O., Gulamali, F., de la Fuente, J., Flynn, B. I., Vajrala, K., Trutner, Z., Jayakumar, P., Tucker-Drob, E. M., Sohail, M., Singh, T., & Narasimhan, V. M. (2023). The genetic architecture and evolution of the human skeletal form. Science, 381(6655). https://doi.org/10.1126/science.adf8009
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Hassan, S. I., Bigler, S., & Siegelbaum, S. A. (2023). Social odor discrimination and its enhancement by associative learning in the hippocampal CA2 region. Neuron, 111(14), 2232-2246.e5. https://doi.org/10.1016/j.neuron.2023.04.026
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Montague, T. G., Rieth, I. J., Gjerswold-Selleck, S., Garcia-Rosales, D., Aneja, S., Elkis, D., Zhu, N., Kentis, S., Rubino, F. A., Nemes, A., Wang, K., Hammond, L. A., Emiliano, R., Ober, R. A., Guo, J., & Axel, R. (2023). A brain atlas for the camouflaging dwarf cuttlefish, Sepia bandensis. Current Biology, 33(13), 2794-2801.e3. https://doi.org/10.1016/j.cub.2023.06.007
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Gao, R., Wang, Z., Uprety, T., Sreenivasan, C. C., Sheng, Z., Hause, B. M., Brunick, C., Wu, H., Luke, T., Bausch, C. L., Sullivan, E. J., Hoppe, A. D., Huber, V. C., Wang, D., & Li, F. (2023). A fully human monoclonal antibody possesses antibody‐dependent cellular cytotoxicity (ADCC) activity against the H1 subtype of influenza A virus by targeting a conserved epitope at the HA1 protomer interface. Journal of Medical Virology, 95(7). Portico. https://doi.org/10.1002/jmv.28901
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Petrey, D., Zhao, H., Trudeau, S. J., Murray, D., & Honig, B. (2023). PrePPI: A Structure Informed Proteome-wide Database of Protein–Protein Interactions. Journal of Molecular Biology, 435(14), 168052. https://doi.org/10.1016/j.jmb.2023.168052
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Doshi, A., Shaw, M., Tonea, R., Moon, S., Minyety, R., Doshi, A., Laine, A., Guo, J., & Danino, T. (2023). Engineered bacterial swarm patterns as spatial records of environmental inputs. Nature Chemical Biology, 19(7), 878–886. https://doi.org/10.1038/s41589-023-01325-2
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Muller, S. Z., Abbott, L. F., & Sawtell, N. B. (2023). A mechanism for differential control of axonal and dendritic spiking underlying learning in a cerebellum-like circuit. Current Biology, 33(13), 2657-2667.e4. https://doi.org/10.1016/j.cub.2023.05.040
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Mays, A., Byars-Winston, A., Hinton, A., Marshall, A. G., Kirabo, A., August, A., Marlin, B. J., Riggs, B., Tolbert, B., Wanjalla, C., Womack, C., Evans, C. S., Barnes, C., Starbird, C., Williams, C., Reynolds, C., Taabazuing, C., Cameron, C. E., Murray, D. D., … Clemons, W. M. (2023). Juneteenth in STEMM and the barriers to equitable science. Cell, 186(12), 2510–2517. https://doi.org/10.1016/j.cell.2023.05.016
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Sutton, M. S., Pletnev, S., Callahan, V., Ko, S., Tsybovsky, Y., Bylund, T., Casner, R. G., Cerutti, G., Gardner, C. L., Guirguis, V., Verardi, R., Zhang, B., Ambrozak, D., Beddall, M., Lei, H., Yang, E. S., Liu, T., Henry, A. R., Rawi, R., … Roederer, M. (2023). Vaccine elicitation and structural basis for antibody protection against alphaviruses. Cell, 186(12), 2672-2689.e25. https://doi.org/10.1016/j.cell.2023.05.019
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Sheng, Z., Bimela, J. S., Wang, M., Li, Z., Guo, Y., & Ho, D. D. (2023). An optimized thermodynamics integration protocol for identifying beneficial mutations in antibody design. Frontiers in Immunology, 14. https://doi.org/10.3389/fimmu.2023.1190416
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Shahsavarani, S., Thibodeaux, D. N., Xu, W., Kim, S. H., Lodgher, F., Nwokeabia, C., Cambareri, M., Yagielski, A. J., Zhao, H. T., Handwerker, D. A., Gonzalez-Castillo, J., Bandettini, P. A., & Hillman, E. M. C. (2023). Cortex-wide neural dynamics predict behavioral states and provide a neural basis for resting-state dynamic functional connectivity. Cell Reports, 42(6), 112527. https://doi.org/10.1016/j.celrep.2023.112527
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García-García, A., Pérez de Diego, R., Flores, C., Rinchai, D., Solé-Violán, J., Deyà-Martínez, À., García-Solis, B., Lorenzo-Salazar, J. M., Hernández-Brito, E., Lanz, A.-L., Moens, L., Bucciol, G., Almuqamam, M., Domachowske, J. B., Colino, E., Santos-Perez, J. L., Marco, F. M., Pignata, C., Bousfiha, A., … Rodríguez-Gallego, C. (2023). Humans with inherited MyD88 and IRAK-4 deficiencies are predisposed to hypoxemic COVID-19 pneumonia. Journal of Experimental Medicine, 220(5). https://doi.org/10.1084/jem.20220170
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Meltzer, S., Boulanger, K. C., Chirila, A. M., Osei-Asante, E., DeLisle, M., Zhang, Q., Kalish, B. T., Tasnim, A., Huey, E. L., Fuller, L. C., Flaherty, E. K., Maniatis, T., Garrett, A. M., Weiner, J. A., & Ginty, D. D. (2023). γ-Protocadherins control synapse formation and peripheral branching of touch sensory neurons. Neuron, 111(11), 1776-1794.e10. https://doi.org/10.1016/j.neuron.2023.03.012
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Roh, D. J., Boehme, A., Mamoon, R., Hooper, D., Cottarelli, A., Ji, R., Mao, E., Kumar, A., Carvalho Poyraz, F., Demel, S. L., Spektor, V., Carmona, J., Hod, E. A., Ironside, N., Gutierrez, J., Guo, J., Konofagou, E., Elkind, M. S. V., & Woo, D. (2023). Relationships of Hemoglobin Concentration, Ischemic Lesions, and Clinical Outcomes in Patients With Intracerebral Hemorrhage. Stroke, 54(4), 1021–1029. https://doi.org/10.1161/strokeaha.122.041410
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Trudeau, S. J., Hwang, H., Mathur, D., Begum, K., Petrey, D., Murray, D., & Honig, B. (2023). PrePCI: A structure‐ and chemical similarity‐informed database of predicted protein compound interactions. Protein Science, 32(4). Portico. https://doi.org/10.1002/pro.4594
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Dumitriu, D., Baldwin, E., Coenen, R. J. J., Hammond, L. A., Peterka, D. S., Heilbrun, L., Frye, R. E., Palmer, R., Norrman, H. N., Fridell, A., Remnelius, K. L., Isaksson, J., Austin, C., Curtin, P., Bölte, S., & Arora, M. (2023). Deciduous tooth biomarkers reveal atypical fetal inflammatory regulation in autism spectrum disorder. IScience, 26(3), 106247. https://doi.org/10.1016/j.isci.2023.106247
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Du, D. X., Simjanoska, M., & Fitzpatrick, A. W. P. (2023). Four-dimensional microED of conformational dynamics in protein microcrystals on the femto-to-microsecond timescales. Journal of Structural Biology, 215(1), 107941. https://doi.org/10.1016/j.jsb.2023.107941
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Paquelet, G. E., Carrion, K., Lacefield, C. O., Zhou, P., Hen, R., & Miller, B. R. (2023). Protocol for in vivo imaging and analysis of brainstem neuronal activity in the dorsal raphe nucleus of freely behaving mice. STAR Protocols, 4(1), 102074. https://doi.org/10.1016/j.xpro.2023.102074
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Galindo, S. E., Wood, A. J., Cooney, P. C., Hammond, L. A., & Grueber, W. B. (2023). Axon–axon interactions determine modality-specific wiring and subcellular synaptic specificity in a somatosensory circuit. Development, 150(5). https://doi.org/10.1242/dev.199832
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Beenken, A., Cerutti, G., Brasch, J., Guo, Y., Sheng, Z., Erdjument-Bromage, H., Aziz, Z., Robbins-Juarez, S. Y., Chavez, E. Y., Ahlsen, G., Katsamba, P. S., Neubert, T. A., Fitzpatrick, A. W. P., Barasch, J., & Shapiro, L. (2023). Structures of LRP2 reveal a molecular machine for endocytosis. Cell, 186(4), 821-836.e13. https://doi.org/10.1016/j.cell.2023.01.016
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Ford, L., Asok, A., Tripp, A. D., Parro, C., Fitzpatrick, M., de Solis, C. A., Chen, P.-T. Y., Shafiian, N., Fioriti, L., Soni, R. K., & Kandel, E. R. (2023). CPEB3 low-complexity motif regulates local protein synthesis via protein–protein interactions in neuronal ribonucleoprotein granules. Proceedings of the National Academy of Sciences, 120(6). https://doi.org/10.1073/pnas.2114747120
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Qian, N., Goldberg, M. E., & Zhang, M. (2023). Tuning curves vs. population responses, and perceptual consequences of receptive-field remapping. Frontiers in Computational Neuroscience, 16. https://doi.org/10.3389/fncom.2022.1060757
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Barack, D. L., Bakkour, A., Shohamy, D., & Salzman, C. D. (2023). Visuospatial information foraging describes search behavior in learning latent environmental features. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-27662-9
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Slavi, N., Balasubramanian, R., Lee, M. A., Liapin, M., Oaks-Leaf, R., Peregrin, J., Potenski, A., Troy, C. M., Ross, M. E., Herrera, E., Kosmidis, S., John, S. W. M., & Mason, C. A. (2023). CyclinD2-mediated regulation of neurogenic output from the retinal ciliary margin is perturbed in albinism. Neuron, 111(1), 49-64.e5. https://doi.org/10.1016/j.neuron.2022.10.025
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Castela, I., Casado-Polanco, R., Rubio, Y. V.-W., da Silva, J. A., Marquez, R., Pro, B., Moratalla, R., Redgrave, P., Costa, R. M., Obeso, J., & Hernandez, L. F. (2023). Selective activation of striatal indirect pathway suppresses levodopa induced-dyskinesias. Neurobiology of Disease, 176, 105930. https://doi.org/10.1016/j.nbd.2022.105930
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Du, D. X., & Fitzpatrick, A. W. P. (2023). Design of an ultrafast pulsed ponderomotive phase plate for cryo-electron tomography. Cell Reports Methods, 3(1), 100387. https://doi.org/10.1016/j.crmeth.2022.100387
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Qvist, J. S., Scherma, M., Jayaram-Lindström, N., Fratta, W., Kandel, D. B., Kandel, E. R., Fadda, P., & Melas, P. A. (2022). Synaptoproteomic Analysis of the Prefrontal Cortex Reveals Spatio-Temporal Changes in SYNGAP1 Following Cannabinoid Exposure in Rat Adolescence. International Journal of Molecular Sciences, 24(1), 698. https://doi.org/10.3390/ijms24010698
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Mangou, K., Moore, A. J., Thiam, L. G., Ba, A., Orfanó, A., Desamours, I., Ndegwa, D. N., Goodwin, J., Guo, Y., Sheng, Z., Patel, S. D., Diallo, F., Sene, S. D., Pouye, M. N., Faye, A. T., Thiam, A., Nunez, V., Diagne, C. T., Sadio, B. D., … Bei, A. K. (2022). Structure-guided insights into potential function of novel genetic variants in the malaria vaccine candidate PfRh5. Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-23929-9
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Lee, A., Kondapalli, C., Virga, D. M., Lewis, T. L., Koo, S. Y., Ashok, A., Mairet-Coello, G., Herzig, S., Foretz, M., Viollet, B., Shaw, R., Sproul, A., & Polleux, F. (2022). Aβ42 oligomers trigger synaptic loss through CAMKK2-AMPK-dependent effectors coordinating mitochondrial fission and mitophagy. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-32130-5
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Murray, G. C., Bais, P., Hatton, C. L., Tadenev, A. L. D., Hoffmann, B. R., Stodola, T. J., Morelli, K. H., Pratt, S. L., Schroeder, D., Doty, R., Fiehn, O., John, S. W. M., Bult, C. J., Cox, G. A., & Burgess, R. W. (2022). Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pathophysiology. Human Molecular Genetics, 31(23), 4055–4074. https://doi.org/10.1093/hmg/ddac151
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Rabadan, M. A., De La Cruz, E. D., Rao, S. B., Chen, Y., Gong, C., Crabtree, G., Xu, B., Markx, S., Gogos, J. A., Yuste, R., & Tomer, R. (2022). An in vitro model of neuronal ensembles. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-31073-1
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Wang, P., Casner, R. G., Nair, M. S., Yu, J., Guo, Y., Wang, M., Chan, J. F.-W., Cerutti, G., Iketani, S., Liu, L., Sheng, Z., Chen, Z., Yuen, K.-Y., Kwong, P. D., Huang, Y., Shapiro, L., & Ho, D. D. (2021). A monoclonal antibody that neutralizes SARS-CoV-2 variants, SARS-CoV, and other sarbecoviruses. Emerging Microbes & Infections, 11(1), 147–157. https://doi.org/10.1080/22221751.2021.2011623
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Teng, S., Zhen, F., Wang, L., Schalchli, J. C., Simko, J., Chen, X., Jin, H., Makinson, C. D., & Peng, Y. (2022). Control of non-REM sleep by ventrolateral medulla glutamatergic neurons projecting to the preoptic area. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-32461-3
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Hankerson, S. H., Shelton, R., Weissman, M., Wells, K. B., Teresi, J., Mallaiah, J., Joshua, A., & Williams, O. (2022). Study protocol for comparing Screening, Brief Intervention, and Referral to Treatment (SBIRT) to referral as usual for depression in African American churches. Trials, 23(1). https://doi.org/10.1186/s13063-021-05767-8
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Qiu, A., Wang, L., Dei Zotti, F., Hudson, K. E., Hod, E. A., & La Carpia, F. (2022). Iron Overload and Iron-Induced Microbiome Changes May Affect Lymphoid Levels Post Bone Marrow Transplant and Graft-Versus-Host Disease Survival in Mice. Blood, 140(Supplement 1), 2465–2466. https://doi.org/10.1182/blood-2022-167300
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