Windolf, C., Yu, H., Paulk, A. C., Meszéna, D., Muñoz, W., Boussard, J., Hardstone, R., Caprara, I., Jamali, M., Kfir, Y., Xu, D., Chung, J. E., Sellers, K. K., Ye, Z., Shaker, J., Lebedeva, A., Raghavan, R., Trautmann, E., Melin, M., … Varol, E. (2025). DREDge: robust motion correction for high-density extracellular recordings across species. Nature Methods. https://doi.org/10.1038/s41592-025-02614-5

Perkins, S. M., Amematsro, E. A., Cunningham, J., Wang, Q., & Churchland, M. M. (2025). An emerging view of neural geometry in motor cortex supports high-performance decoding. ELife, 12. CLOCKSS. https://doi.org/10.7554/elife.89421

Di Santo, S., Dipoppa, M., Keller, A., Roth, M., Scanziani, M., & Miller, K. D. (2025). Contextual modulation emerges by integrating feedforward and feedback processing in mouse visual cortex. Cell Reports, 44(1), 115088. https://doi.org/10.1016/j.celrep.2024.115088

Xia, F., Fascianelli, V., Vishwakarma, N., Ghinger, F. G., Kwon, A., Gergues, M. M., Lalani, L. K., Fusi, S., & Kheirbek, M. A. (2024). Understanding the neural code of stress to control anhedonia. Nature. https://doi.org/10.1038/s41586-024-08241-y

Ounadjela, J. R., Zhang, K., Kobayashi-Kirschvink, K. J., Jin, K., J. C. Russell, A., Lackner, A. I., Callahan, C., Viggiani, F., Dey, K. K., Jagadeesh, K., Maxian, T., Prandstetter, A.-M., Nadaf, N., Gong, Q., Raichur, R., Zvezdov, M. L., Hui, M., Simpson, M., Liu, X., … Shu, J. (2024). Spatial multiomic landscape of the human placenta at molecular resolution. Nature Medicine. https://doi.org/10.1038/s41591-024-03073-9

Kassraian, P., Bigler, S. K., Gilly Suarez, D. M., Shrotri, N., Barnett, A., Lee, H.-J., Young, W. S., & Siegelbaum, S. A. (2024). The hippocampal CA2 region discriminates social threat from social safety. Nature Neuroscience, 27(11), 2193–2206. https://doi.org/10.1038/s41593-024-01771-8

Buss, E. W., Lofaro, O. M., Barnett, A., Leroy, F., Santoro, B., Siegelbaum, S. A., & Bock, T. (2024). HCN1 hyperpolarization-activated cyclic nucleotide–gated channels enhance evoked GABA release from parvalbumin-positive interneurons. Proceedings of the National Academy of Sciences, 121(42). https://doi.org/10.1073/pnas.2319246121

Singletary, N. M., Horga, G., & Gottlieb, J. (2024). A neural code supporting prospective probabilistic reasoning for instrumental information demand in humans. Communications Biology, 7(1). https://doi.org/10.1038/s42003-024-06927-7

Courellis, H. S., Minxha, J., Cardenas, A. R., Kimmel, D. L., Reed, C. M., Valiante, T. A., Salzman, C. D., Mamelak, A. N., Fusi, S., & Rutishauser, U. (2024). Abstract representations emerge in human hippocampal neurons during inference. Nature, 632(8026), 841–849. https://doi.org/10.1038/s41586-024-07799-x

Xia, J., Jasper, A., Kohn, A., & Miller, K. D. (2024). Circuit-motivated generalized affine models characterize stimulus-dependent visual cortical shared variability. IScience, 27(8), 110512. https://doi.org/10.1016/j.isci.2024.110512

Fascianelli, V., Battista, A., Stefanini, F., Tsujimoto, S., Genovesio, A., & Fusi, S. (2024). Neural representational geometries reflect behavioral differences in monkeys and recurrent neural networks. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-50503-w

Liao, Z., Gonzalez, K. C., Li, D. M., Yang, C. M., Holder, D., McClain, N. E., Zhang, G., Evans, S. W., Chavarha, M., Simko, J., Makinson, C. D., Lin, M. Z., Losonczy, A., & Negrean, A. (2024). Functional architecture of intracellular oscillations in hippocampal dendrites. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-50546-z

Buss, E. W., Jiang, Y.-Q., Santoro, B., Brann, D. H., Nicholson, D. A., Siegelbaum, S. A., & Sun, Q. (2024). Regulation by Presynaptic NMDA Receptors of Non-Linear Postsynaptic Summation of the Cortical Input to CA1 Pyramidal Neurons. Neuroscience. https://doi.org/10.1016/j.neuroscience.2024.06.005

Holt, C. J., Miller, K. D., & Ahmadian, Y. (2024). The stabilized supralinear network accounts for the contrast dependence of visual cortical gamma oscillations. PLOS Computational Biology, 20(6), e1012190. https://doi.org/10.1371/journal.pcbi.1012190

Castillo, P. E., Desarménien, M. G., & Siegelbaum, S. A. (2024). Vivien Chevaleyre (1973–2024). Neuron, 112(9), 1387–1389. https://doi.org/10.1016/j.neuron.2024.03.030

Kay, K., Biderman, N., Khajeh, R., Beiran, M., Cueva, C. J., Shohamy, D., Jensen, G., Wei, X.-X., Ferrera, V. P., & Abbott, L. (2024). Emergent neural dynamics and geometry for generalization in a transitive inference task. PLOS Computational Biology, 20(4), e1011954. https://doi.org/10.1371/journal.pcbi.1011954

Zhao, Z., Yu, H., Wisniewski, D. J., Cea, C., Ma, L., Trautmann, E. M., Churchland, M. M., Gelinas, J. N., & Khodagholy, D. (2024). Formation of Anisotropic Conducting Interlayer for High‐Resolution Epidermal Electromyography Using Mixed‐Conducting Particulate Composite. Advanced Science, 11(27). Portico. https://doi.org/10.1002/advs.202308014

Sendhilnathan, N., Bostan, A. C., Strick, P. L., & Goldberg, M. E. (2024). A cerebro-cerebellar network for learning visuomotor associations. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-46281-0

Harken, A. D., Deoli, N. T., Perez Campos, C., Ponnaiya, B., Garty, G., Lee, G. S., Casper, M. J., Dhingra, S., Li, W., Johnson, G. W., Amundson, S. A., Grabham, P. W., Hillman, E. M. C., & Brenner, D. J. (2024). Combined ion beam irradiation platform and 3D fluorescence microscope for cellular cancer research. Biomedical Optics Express, 15(4), 2561. https://doi.org/10.1364/boe.522969

Boyle, L. M., Posani, L., Irfan, S., Siegelbaum, S. A., & Fusi, S. (2024). Tuned geometries of hippocampal representations meet the computational demands of social memory. Neuron, 112(8), 1358-1371.e9. https://doi.org/10.1016/j.neuron.2024.01.021

Goris, R. L. T., Coen-Cagli, R., Miller, K. D., Priebe, N. J., & Lengyel, M. (2024). Response sub-additivity and variability quenching in visual cortex. Nature Reviews Neuroscience, 25(4), 237–252. https://doi.org/10.1038/s41583-024-00795-0

Singletary, N. M., Gottlieb, J., & Horga, G. (2024). The parieto-occipital cortex is a candidate neural substrate for the human ability to approximate Bayesian inference. Communications Biology, 7(1). https://doi.org/10.1038/s42003-024-05821-6

Sanzeni, A., Palmigiano, A., Nguyen, T. H., Luo, J., Nassi, J. J., Reynolds, J. H., Histed, M. H., Miller, K. D., & Brunel, N. (2023). Mechanisms underlying reshuffling of visual responses by optogenetic stimulation in mice and monkeys. Neuron, 111(24), 4102-4115.e9. https://doi.org/10.1016/j.neuron.2023.09.018

Nicholas, J., Amlang, C., Lin, C.-Y. R., Montaser-Kouhsari, L., Desai, N., Pan, M.-K., Kuo, S.-H., & Shohamy, D. (2023). The Role of the Cerebellum in Learning to Predict Reward: Evidence from Cerebellar Ataxia. The Cerebellum, 23(4), 1355–1368. https://doi.org/10.1007/s12311-023-01633-2

Löffler, A., Zylberberg, A., Shadlen, M. N., & Wolpert, D. M. (2023). Judging the difficulty of perceptual decisions. ELife, 12. CLOCKSS. https://doi.org/10.7554/elife.86892

Whitebirch, A. C., Santoro, B., Barnett, A., Lisgaras, C. P., Scharfman, H. E., & Siegelbaum, S. A. (2023). Reduced Cholecystokinin-Expressing Interneuron Input Contributes to Disinhibition of the Hippocampal CA2 Region in a Mouse Model of Temporal Lobe Epilepsy. The Journal of Neuroscience, 43(41), 6930–6949. https://doi.org/10.1523/jneurosci.2091-22.2023

Stine, G. M., Trautmann, E. M., Jeurissen, D., & Shadlen, M. N. (2023). A neural mechanism for terminating decisions. Neuron, 111(16), 2601-2613.e5. https://doi.org/10.1016/j.neuron.2023.05.028

Hassan, S. I., Bigler, S., & Siegelbaum, S. A. (2023). Social odor discrimination and its enhancement by associative learning in the hippocampal CA2 region. Neuron, 111(14), 2232-2246.e5. https://doi.org/10.1016/j.neuron.2023.04.026

Pilaz, L.-J., Liu, J., Joshi, K., Tsunekawa, Y., Musso, C. M., D’Arcy, B. R., Suzuki, I. K., Alsina, F. C., KC, P., Sethi, S., Vanderhaeghen, P., Polleux, F., & Silver, D. L. (2023). Subcellular mRNA localization and local translation of Arhgap11a in radial glial progenitors regulates cortical development. Neuron, 111(6), 839-856.e5. https://doi.org/10.1016/j.neuron.2023.02.023

Ford, L., Asok, A., Tripp, A. D., Parro, C., Fitzpatrick, M., de Solis, C. A., Chen, P.-T. Y., Shafiian, N., Fioriti, L., Soni, R. K., & Kandel, E. R. (2023). CPEB3 low-complexity motif regulates local protein synthesis via protein–protein interactions in neuronal ribonucleoprotein granules. Proceedings of the National Academy of Sciences, 120(6). https://doi.org/10.1073/pnas.2114747120

Barack, D. L., Bakkour, A., Shohamy, D., & Salzman, C. D. (2023). Visuospatial information foraging describes search behavior in learning latent environmental features. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-27662-9

DePasquale, B., Sussillo, D., Abbott, L. F., & Churchland, M. M. (2023). The centrality of population-level factors to network computation is demonstrated by a versatile approach for training spiking networks. Neuron, 111(5), 631-649.e10. https://doi.org/10.1016/j.neuron.2022.12.007

Lee, A., Kondapalli, C., Virga, D. M., Lewis, T. L., Koo, S. Y., Ashok, A., Mairet-Coello, G., Herzig, S., Foretz, M., Viollet, B., Shaw, R., Sproul, A., & Polleux, F. (2022). Aβ42 oligomers trigger synaptic loss through CAMKK2-AMPK-dependent effectors coordinating mitochondrial fission and mitophagy. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-32130-5

Hewitt, V. L., Miller-Fleming, L., Twyning, M. J., Andreazza, S., Mattedi, F., Prudent, J., Polleux, F., Vagnoni, A., & Whitworth, A. J. (2022). Decreasing pdzd8-mediated mito–ER contacts improves organismal fitness and mitigates Aβ42toxicity. Life Science Alliance, 5(11), e202201531. https://doi.org/10.26508/lsa.202201531

Marshall, N. J., Glaser, J. I., Trautmann, E. M., Amematsro, E. A., Perkins, S. M., Shadlen, M. N., Abbott, L. F., Cunningham, J. P., & Churchland, M. M. (2022). Flexible neural control of motor units. Nature Neuroscience, 25(11), 1492–1504. https://doi.org/10.1038/s41593-022-01165-8

Whitebirch, A. C., LaFrancois, J. J., Jain, S., Leary, P., Santoro, B., Siegelbaum, S. A., & Scharfman, H. E. (2022). Enhanced excitability of the hippocampal CA2 region and its contribution to seizure activity in a mouse model of temporal lobe epilepsy. Neuron, 110(19), 3121-3138.e8. https://doi.org/10.1016/j.neuron.2022.07.020

Fumarola, F., Hein, B., & Miller, K. D. (2022). Mechanisms for Spontaneous Symmetry Breaking in Developing Visual Cortex. Physical Review X, 12(3). https://doi.org/10.1103/physrevx.12.031024

Xu, P., Shimomura, K., Lee, C., Gao, X., Simpson, E. H., Huang, G., Joseph, C. M., Kumar, V., Ge, W.-P., Pawlowski, K. S., Frye, M. D., Kourrich, S., Kandel, E. R., & Takahashi, J. S. (2022). A missense mutation in Kcnc3 causes hippocampal learning deficits in mice. Proceedings of the National Academy of Sciences, 119(31). https://doi.org/10.1073/pnas.2204901119

Stujenske, J. M., O’Neill, P.-K., Fernandes-Henriques, C., Nahmoud, I., Goldburg, S. R., Singh, A., Diaz, L., Labkovich, M., Hardin, W., Bolkan, S. S., Reardon, T. R., Spellman, T. J., Salzman, C. D., Gordon, J. A., Liston, C., & Likhtik, E. (2022). Prelimbic cortex drives discrimination of non-aversion via amygdala somatostatin interneurons. Neuron, 110(14), 2258-2267.e11. https://doi.org/10.1016/j.neuron.2022.03.020

Benoit, L. J., Holt, E. S., Posani, L., Fusi, S., Harris, A. Z., Canetta, S., & Kellendonk, C. (2022). Adolescent thalamic inhibition leads to long-lasting impairments in prefrontal cortex function. Nature Neuroscience, 25(6), 714–725. https://doi.org/10.1038/s41593-022-01072-y

Lopez-Rojas, J., de Solis, C. A., Leroy, F., Kandel, E. R., & Siegelbaum, S. A. (2022). A direct lateral entorhinal cortex to hippocampal CA2 circuit conveys social information required for social memory. Neuron, 110(9), 1559-1572.e4. https://doi.org/10.1016/j.neuron.2022.01.028

Sendhilnathan, N., Goldberg, M. E., & Ipata, A. E. (2022). Mixed Selectivity in the Cerebellar Purkinje-Cell Response during Visuomotor Association Learning. The Journal of Neuroscience, 42(18), 3847–3855. https://doi.org/10.1523/jneurosci.1771-21.2022

Bock, T., Negrean, A., & Siegelbaum, S. A. (2022). Somatic Depolarization Enhances Hippocampal CA1 Dendritic Spike Propagation and Distal Input-Driven Synaptic Plasticity. The Journal of Neuroscience, 42(16), 3406–3425. https://doi.org/10.1523/jneurosci.0780-21.2022

Schroeder, K. E., Perkins, S. M., Wang, Q., & Churchland, M. M. (2021). Cortical Control of Virtual Self-Motion Using Task-Specific Subspaces. The Journal of Neuroscience, 42(2), 220–239. https://doi.org/10.1523/jneurosci.2687-20.2021

Xue, A. M., Foerde, K., Walsh, B. T., Steinglass, J. E., Shohamy, D., & Bakkour, A. (2021). Neural Representations of Food-Related Attributes in the Human Orbitofrontal Cortex during Choice Deliberation in Anorexia Nervosa. The Journal of Neuroscience, 42(1), 109–120. https://doi.org/10.1523/jneurosci.0958-21.2021

Kosmidis, S., Negrean, A., Dranovsky, A., Losonczy, A., & Kandel, E. R. (2021). A fast, aqueous, reversible three-day tissue clearing method for adult and embryonic mouse brain and whole body. Cell Reports Methods, 1(7), 100090. https://doi.org/10.1016/j.crmeth.2021.100090

Sendhilnathan, N., Ipata, A., & Goldberg, M. E. (2021). Mid-lateral cerebellar complex spikes encode multiple independent reward-related signals during reinforcement learning. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-26338-0