Publications

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McAvoy, M., Prieto, P. C., Kaczmarzyk, J. R., Fernández, I. S., McNulty, J., Smith, T., Yu, K.-H., Gormley, W. B., & Arnaout, O. (2021). Classification of glioblastoma versus primary central nervous system lymphoma using convolutional neural networks. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-94733-0
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Okur, V., Hamm, L., Kavus, H., Mebane, C., Robinson, S., Levy, B., & Chung, W. K. (2021). Clinical and genomic characterization of 8p cytogenomic disorders. Genetics in Medicine, 23(12), 2342–2351. https://doi.org/10.1038/s41436-021-01270-2
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Dykes, J. C., Rosenthal, D. N., Bernstein, D., McElhinney, D. B., Chrisant, M. R. K., Daly, K. P., Ameduri, R. K., Knecht, K., Richmond, M. E., Lin, K. Y., Urschel, S., Simmonds, J., Simpson, K. E., Albers, E. L., Khan, A., Schumacher, K., Almond, C. S., & Chen, S. (2021). Clinical and hemodynamic characteristics of the pediatric failing Fontan. The Journal of Heart and Lung Transplantation, 40(12), 1529–1539. https://doi.org/10.1016/j.healun.2021.07.017
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Jaafar, S., Lescoat, A., Huang, S., Gordon, J., Hinchcliff, M., Shah, A. A., Assassi, S., Domsic, R., Bernstein, E. J., Steen, V., Elliott, S., Hant, F., Castelino, F. V., Shanmugam, V. K., Correia, C., Varga, J., Nagaraja, V., Roofeh, D., Frech, T., & Khanna, D. (2021). Clinical characteristics, visceral involvement, and mortality in at-risk or early diffuse systemic sclerosis: a longitudinal analysis of an observational prospective multicenter US cohort. Arthritis Research & Therapy, 23(1). https://doi.org/10.1186/s13075-021-02548-1
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Stonbraker, S., Liu, J., Sanabria, G., George, M., Cunto-Amesty, S., Alcántara, C., Abraído-Lanza, A. F., Halpern, M., Rowell-Cunsolo, T., Bakken, S., & Schnall, R. (2021). Clinician Use of HIV-Related Infographics During Clinic Visits in the Dominican Republic is Associated with Lower Viral Load and Other Improvements in Health Outcomes. AIDS and Behavior, 25(12), 4061–4073. https://doi.org/10.1007/s10461-021-03331-8
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Martin, A., Weller, I., Amsalem, D., Duvivier, R., Jaarsma, D., & de Carvalho Filho, M. A. (2020). Co-constructive Patient Simulation. Simulation in Healthcare: The Journal of the Society for Simulation in Healthcare, 16(6), e129–e135. https://doi.org/10.1097/sih.0000000000000528
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Pavol, M. A., Boehme, A. K., Yuzefpolskaya, M., Maurer, M. S., Casida, J., Festa, J. R., Ibeh, C., & Willey, J. Z. (2021). Cognition predicts days-alive-out-of-hospital after LVAD implantation. The International journal of artificial organs, 44(12), 952–955. https://doi.org/10.1177/03913988211018484

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Sabates, J., Belleville, S., Castellani, M., Dwolatzky, T., Hampstead, B. M., Lampit, A., Simon, S., Anstey, K., Goodenough, B., Mancuso, S., Marques, D., Sinnott, R., & Bahar-Fuchs, A. (2021). CogTale: an online platform for the evaluation, synthesis, and dissemination of evidence from cognitive interventions studies. Systematic Reviews, 10(1). https://doi.org/10.1186/s13643-021-01787-2
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Greenstein, R. J., Su, L., Grant, I. R., Foddai, A. C. G., Turner, A., Nagati, J. S., Brown, S. T., & Stabel, J. R. (2021). Comparison of a mycobacterial phage assay to detect viable Mycobacterium avium subspecies paratuberculosis with standard diagnostic modalities in cattle with naturally infected Johne disease. Gut Pathogens, 13(1). https://doi.org/10.1186/s13099-021-00425-5
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Karagiannidis, C., Slutsky, A. S., Bein, T., Windisch, W., Weber-Carstens, S., & Brodie, D. (2021). Complete countrywide mortality in COVID patients receiving ECMO in Germany throughout the first three waves of the pandemic. Critical Care, 25(1). https://doi.org/10.1186/s13054-021-03831-y
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Jambhekar, A., Wong, A., Taback, B., Rao, R., Horowitz, D., Connolly, E., & Wiechmann, L. (2021). Complication Rates After Intraoperative Radiation Therapy: Do Applicator Size and Distance to Skin Matter? Journal of Surgical Research, 268, 440–444. https://doi.org/10.1016/j.jss.2021.06.078
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Loureiro-Campos, E., Mateus-Pinheiro, A., Patrício, P., Soares-Cunha, C., Silva, J., Sardinha, V. M., Mendes-Pinheiro, B., Silveira-Rosa, T., Domingues, A. V., Rodrigues, A. J., Oliveira, J., Sousa, N., Alves, N. D., & Pinto, L. (2021). Constitutive deficiency of the neurogenic hippocampal modulator AP2γ promotes anxiety-like behavior and cumulative memory deficits in mice from juvenile to adult periods. ELife, 10. CLOCKSS. https://doi.org/10.7554/elife.70685
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Warshaw, E. M., Schlarbaum, J. P., Silverberg, J. I., DeKoven, J. G., Fransway, A. F., Taylor, J. S., Maibach, H. I., Fowler, J. F., Atwater, A. R., Reeder, M. J., Zug, K. A., Belsito, D. V., Sasseville, D., DeLeo, V. A., & Pratt, M. D. (2021). Contact dermatitis to personal care products is increasing (but different!) in males and females: North American Contact Dermatitis Group data, 1996-2016. Journal of the American Academy of Dermatology, 85(6), 1446–1455. https://doi.org/10.1016/j.jaad.2020.10.003
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Alasfar, S., Hall, I. E., Mansour, S. G., Jia, Y., Thiessen-Philbrook, H. R., Weng, F. L., Singh, P., Schröppel, B., Muthukumar, T., Mohan, S., Malik, R. F., Harhay, M. N., Doshi, M. D., Akalin, E., Bromberg, J. S., Brennan, D. C., Reese, P. P., & Parikh, C. R. (2021). Contemporary incidence and risk factors of post transplant Erythrocytosis in deceased donor kidney transplantation. BMC Nephrology, 22(1). https://doi.org/10.1186/s12882-021-02231-2
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Ramphal, B., Pagliaccio, D., Thomas, L. V., He, X., & Margolis, A. E. (2021). Contributions of Cerebellar White Matter Microstructure to Social Difficulty in Nonverbal Learning Disability. Cerebellum (London, England), 20(6), 931–937. https://doi.org/10.1007/s12311-021-01265-4

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Karnik, N. S., Campbell, C. I., Curtis, M. E., Fiellin, D. A., Ghitza, U., Hefner, K., Hser, Y.-I., McHugh, R. K., Murphy, S. M., McPherson, S. M., Moran, L., Mooney, L. J., Wu, L.-T., Shmueli-Blumberg, D., Shulman, M., Schwartz, R. P., Stephens, K. A., Watkins, K. E., & Marsden, J. (2021). Core outcomes set for research on the treatment of opioid use disorder (COS-OUD): the National Institute on Drug Abuse Clinical Trials Network protocol for an e-Delphi consensus study. Trials, 22(1). https://doi.org/10.1186/s13063-021-05051-9
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Fredericksen, R. J., Nance, R. M., Whitney, B. M., Harding, B. N., Fitzsimmons, E., Del Rio, C., Eron, J., Feaster, D. J., Kalokhe, A. S., Mathews, W. C., Mayer, K. H., Metsch, L. R., Mugavero, M. J., Potter, J., O’Cleirigh, C., Napravnik, S., Rodriguez, B., Ruderman, S., JAC, D., & Crane, H. M. (2021). Correlates of psychological intimate partner violence with HIV care outcomes on patients in HIV care. BMC Public Health, 21(1). https://doi.org/10.1186/s12889-021-11854-x
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Filiatreau, L. M., Ebasone, P. V., Dzudie, A., Ajeh, R., Pence, B., Wainberg, M., Nash, D., Yotebieng, M., Anastos, K., Pefura-Yone, E., Nsame, D., & Parcesepe, A. M. (2021). Correlates of self-reported history of mental health help-seeking: a cross-sectional study among individuals with symptoms of a mental or substance use disorder initiating care for HIV in Cameroon. BMC Psychiatry, 21(1). https://doi.org/10.1186/s12888-021-03306-y
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Chung, Y., Lee, H., Weiner, M. W., Aisen, P., Petersen, R., Jack, C. R., Jagust, W., Trojanowki, J. Q., Toga, A. W., Beckett, L., Green, RobertC., Saykin, A. J., Morris, J., Shaw, L. M., Khachaturian, Z., Sorensen, G., Carrillo, M., Kuller, L., … Fargher, K. (2021). Correlation between Alzheimer’s disease and type 2 diabetes using non-negative matrix factorization. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-94048-0
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de Jong, J. O., Llapashtica, C., Genestine, M., Strauss, K., Provenzano, F., Sun, Y., Zhu, H., Cortese, G. P., Brundu, F., Brigatti, K. W., Corneo, B., Migliori, B., Tomer, R., Kushner, S. A., Kellendonk, C., Javitch, J. A., Xu, B., & Markx, S. (2021). Cortical overgrowth in a preclinical forebrain organoid model of CNTNAP2-associated autism spectrum disorder. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-24358-4
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Buchman, A. S., Yu, L., Oveisgharan, S., Petyuk, V. A., Tasaki, S., Gaiteri, C., Wilson, R. S., Grodstein, F., Schneider, J. A., Klein, H.-U., De Jager, P. L., & Bennett, D. A. (2021). Cortical proteins may provide motor resilience in older adults. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-90859-3
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Motter, J. N., Lee, S., Sneed, J. R., Doraiswamy, P. M., Pelton, G. H., Petrella, J. R., & Devanand, D. P. (2021). Cortical thickness predicts remission of depression with antidepressants in patients with late-life depression and cognitive impairment. Journal of Affective Disorders, 295, 438–445. https://doi.org/10.1016/j.jad.2021.08.062
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Murphy, S. M., Jeng, P. J., McCollister, K. E., Leff, J. A., Jalali, A., Shulman, M., Lee, J. D., Nunes, E. V., Novo, P., Rotrosen, J., & Schackman, B. R. (2021). Cost-effectiveness implications of increasing the efficiency of the extended-release naltrexone induction process for the treatment of opioid use disorder: a secondary analysis. Addiction (Abingdon, England), 116(12), 3444–3453. https://doi.org/10.1111/add.15531

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Gong, B., Li, D., Kusko, R., Novoradovskaya, N., Zhang, Y., Wang, S., Pabón-Peña, C., Zhang, Z., Lai, K., Cai, W., LoCoco, J. S., Lader, E., Richmond, T. A., Mittal, V. K., Liu, L.-C., Johann, D. J., Willey, J. C., Bushel, P. R., Yu, Y., … Xu, J. (2021). Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions. Genome Biology, 22(1). https://doi.org/10.1186/s13059-021-02315-0
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Salazar, R., Beenders, S., LaMarca, N. M., Thornburg, O., Rubin-Thompson, L., Snow, A., Goldman, S., Chung, W. K., & Bain, J. M. (2021). Cross-sectional, quantitative analysis of motor function in females with HNRNPH2-related disorder. Research in Developmental Disabilities, 119, 104110. https://doi.org/10.1016/j.ridd.2021.104110
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Grgic, O., Gazzara, M. R., Chesi, A., Medina-Gomez, C., Cousminer, D. L., Mitchell, J. A., Prijatelj, V., de Vries, J., Shevroja, E., McCormack, S. E., Kalkwarf, H. J., Lappe, J. M., Gilsanz, V., Oberfield, S. E., Shepherd, J. A., Kelly, A., Mahboubi, S., Faucz, F. R., Feelders, R. A., … Rivadeneira, F. (2021). CYP11B1 variants influence skeletal maturation via alternative splicing. Communications Biology, 4(1). https://doi.org/10.1038/s42003-021-02774-y
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Smart, K., Yttredahl, A., Oquendo, M. A., Mann, J. J., Hillmer, A. T., Carson, R. E., & Miller, J. M. (2021). Data-driven analysis of kappa opioid receptor binding in major depressive disorder measured by positron emission tomography. Translational Psychiatry, 11(1). https://doi.org/10.1038/s41398-021-01729-5
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Zhao, W., Dovas, A., Spinazzi, E. F., Levitin, H. M., Banu, M. A., Upadhyayula, P., Sudhakar, T., Marie, T., Otten, M. L., Sisti, M. B., Bruce, J. N., Canoll, P., & Sims, P. A. (2021). Deconvolution of cell type-specific drug responses in human tumor tissue with single-cell RNA-seq. Genome Medicine, 13(1). https://doi.org/10.1186/s13073-021-00894-y
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Lu, L., Dercle, L., Zhao, B., & Schwartz, L. H. (2021). Deep learning for the prediction of early on-treatment response in metastatic colorectal cancer from serial medical imaging. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-26990-6
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Huang, Y., Liu, Y., Steel, P. A. D., Axsom, K. M., Lee, J. R., Tummalapalli, S. L., Wang, F., Pathak, J., Subramanian, L., & Zhang, Y. (2021). Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups. Journal of the American Medical Informatics Association, 28(12), 2641–2653. https://doi.org/10.1093/jamia/ocab203
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Jacobsen, J., Brenner, K. O., Shalev, D., Rosenberg, L. B., & Jackson, V. A. (2021). Defining Clinical Attunement: A Ubiquitous But Undertheorized Aspect of Palliative Care. Journal of Palliative Medicine, 24(12), 1757–1761. https://doi.org/10.1089/jpm.2021.0442
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Edwards, M. M., Zuccaro, M. V., Sagi, I., Ding, Q., Vershkov, D., Benvenisty, N., Egli, D., & Koren, A. (2021). Delayed DNA replication in haploid human embryonic stem cells. Genome Research, 31(12), 2155–2169. https://doi.org/10.1101/gr.275953.121
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Shuffrey, L. C., Rodriguez, C., Rodriguez, D. J., Mahallati, H., Jayaswal, M., Barbosa, J. R., Syme, S., Gimenez, L. A., Pini, N., Lucchini, M., & Fifer, W. P. (2021). Delayed maturation of P2 flash visual evoked potential (VEP) latency in newborns of gestational diabetic mothers. Early Human Development, 163, 105503. https://doi.org/10.1016/j.earlhumdev.2021.105503
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Wang, A., Halbach, V. V., Dowd, C. F., Alexander, M. D., Hallam, D. K., Ghodke, B., Moazami, G., Mandigo, G. K., Lavine, S. D., & Meyers, P. M. (2020). Delayed-Onset Cranial Nerve Palsy After Transvenous Embolization of Indirect Carotid Cavernous Fistulas. Journal of Neuro-Ophthalmology, 41(4), e639–e643. https://doi.org/10.1097/wno.0000000000001067
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Forsythe, B., Lu, Y., Agarwalla, A., Ezuma, C. O., Patel, B. H., Nwachukwu, B. U., Beletsky, A., Chahla, J., Kym, C. R., Yanke, A. B., Cole, B. J., Bush-Joseph, C. A., Bach, B. R., & Verma, N. N. (2021). Delaying ACL reconstruction beyond 6 months from injury impacts likelihood for clinically significant outcome improvement. The Knee, 33, 290–297. https://doi.org/10.1016/j.knee.2021.10.010
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Bajorek, L. P., Kiekhofer, R., Hall, M., Taylor, J., Lucente, D. E., Brushaber, D., Appleby, B., Coppolla, G., Bordelon, Y. M., Botha, H., Dickerson, B. C., Dickson, D. W., Domoto‐Reilly, K., Fagan, A. M., Fields, J. A., Fong, J. C., Foroud, T. M., Forsberg, L. K., … Galasko, D. R. (2021). Demographic and psychosocial factors associated with the decision to learn mutation status in familial frontotemporal dementia and the impact of disclosure on mood. Alzheimer’s & Dementia, 17(S7). Portico. https://doi.org/10.1002/alz.050692
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Jain, K., Tagliafierro, T., Marques, A., Sanchez-Vicente, S., Gokden, A., Fallon, B., Mishra, N., Briese, T., Kapoor, V., Sameroff, S., Guo, C., Marcos, L. A., Hu, L., Lipkin, W. I., & Tokarz, R. (2021). Development of a capture sequencing assay for enhanced detection and genotyping of tick-borne pathogens. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-91956-z
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Yang, W., & Shaman, J. (2021). Development of a model-inference system for estimating epidemiological characteristics of SARS-CoV-2 variants of concern. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-25913-9
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Staller, K., Olén, O., Söderling, J., Roelstraete, B., Törnblom, H., Khalili, H., Song, M., & Ludvigsson, J. F. (2021). Diagnostic yield of endoscopy in irritable bowel syndrome: A nationwide prevalence study 1987–2016. European Journal of Internal Medicine, 94, 85–92. https://doi.org/10.1016/j.ejim.2021.08.001
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Vollmer, B. L., Chen, X., Kulick, E. R., Elkind, M. S. V., & Boehme, A. K. (2021). Differences in healthcare visit frequency and type one year prior to stroke among young versus middle-aged adults. BMC Health Services Research, 21(1). https://doi.org/10.1186/s12913-021-06064-5
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Reinen, J. M., Whitton, A. E., Pizzagalli, D. A., Slifstein, M., Abi-Dargham, A., McGrath, P. J., Iosifescu, D. V., & Schneier, F. R. (2021). Differential reinforcement learning responses to positive and negative information in unmedicated individuals with depression. European Neuropsychopharmacology, 53, 89–100. https://doi.org/10.1016/j.euroneuro.2021.08.002
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Wei, S., Kohl, E., Djandji, A., Morgan, S., Whittier, S., Mansukhani, M., Hod, E., D’Alton, M., Suh, Y., & Williams, Z. (2021). Direct diagnostic testing of SARS-CoV-2 without the need for prior RNA extraction. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-81487-y
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Lacy, S. C., Saint Croix, G. R., Porter, K., Latib, A., & Beohar, N. (2021). Direct oral anticoagulants in patients with atrial fibrillation and bioprosthetic valve replacement: A meta‐analysis. Catheterization and Cardiovascular Interventions, 98(7). Portico. https://doi.org/10.1002/ccd.29911
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Dzierba, A. L., Khalil, A. M., Derry, K. L., Madahar, P., & Beitler, J. R. (2021). Discordance Between Respiratory Drive and Sedation Depth in Critically Ill Patients Receiving Mechanical Ventilation*. Critical Care Medicine, 49(12), 2090–2101. https://doi.org/10.1097/ccm.0000000000005113
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Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., Hayashizaki, Y., Itoh, M., Tagami, M., Murata, M., Kojima-Ishiyama, M., Noma, S., Noguchi, S., Kasukawa, T., Hasegawa, A., Suzuki, H., Nishiyori-Sueki, H., Frith, M. C., … Lecellier, C.-H. (2021). Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-23143-7
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Kragel, J. E., Ezzyat, Y., Lega, B. C., Sperling, M. R., Worrell, G. A., Gross, R. E., Jobst, B. C., Sheth, S. A., Zaghloul, K. A., Stein, J. M., & Kahana, M. J. (2021). Distinct cortical systems reinstate the content and context of episodic memories. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-24393-1
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Maidan, I., Mirelman, A., Hausdorff, J. M., Stern, Y., & Habeck, C. G. (2021). Distinct cortical thickness patterns link disparate cerebral cortex regions to select mobility domains. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-85058-z
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