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Yuan, H., Reynolds, C., Ng, S., & Yang, W. (2022). Factors affecting the transmission of SARS‐CoV‐2 in school settings. Influenza and Other Respiratory Viruses, 16(4), 643–652. Portico. https://doi.org/10.1111/irv.12968
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Rybkina, K., Davis‐Porada, J., & Farber, D. L. (2022). Tissue immunity to SARS‐CoV‐2: Role in protection and immunopathology*. Immunological Reviews, 309(1), 25–39. Portico. https://doi.org/10.1111/imr.13112
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Dawood, F. S., Varner, M., Tita, A., Newes-Adeyi, G., Gyamfi-Bannerman, C., Battarbee, A., Bruno, A., Daugherty, M., Reichle, L., Vorwaller, K., Vargas, C., Parks, M., Powers, E., Lucca-Susana, M., Gibson, M., Subramaniam, A., Cheng, Y. J., Feng, P.-J., Ellington, S., … Stockwell, M. S. (2021). Incidence and Clinical Characteristics of and Risk Factors for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Among Pregnant Individuals in the United States. Clinical Infectious Diseases, 74(12), 2218–2226. https://doi.org/10.1093/cid/ciab713
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Schmitz, K. S., Geers, D., de Vries, R. D., Bovier, T. F., Mykytyn, A. Z., Geurts van Kessel, C. H., Haagmans, B. L., Porotto, M., de Swart, R. L., & Moscona, A. (2022). Potency of Fusion-Inhibitory Lipopeptides against SARS-CoV-2 Variants of Concern. MBio, 13(3). https://doi.org/10.1128/mbio.01249-22
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Yang, W., & Shaman, J. (2022). COVID-19 pandemic dynamics in India, the SARS-CoV-2 Delta variant and implications for vaccination. Journal of The Royal Society Interface, 19(191). https://doi.org/10.1098/rsif.2021.0900
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Wang, Q., Anang, S., Iketani, S., Guo, Y., Liu, L., Katsamba, P. S., Shapiro, L., Ho, D. D., & Sodroski, J. G. (2022). Functional properties of the spike glycoprotein of the emerging SARS-CoV-2 variant B.1.1.529. Cell Reports, 39(11), 110924. https://doi.org/10.1016/j.celrep.2022.110924
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Veguilla, V., Fowlkes, A. L., Bissonnette, A., Beitel, S., Gaglani, M., Porucznik, C. A., Stockwell, M. S., Tyner, H. L., Naleway, A. L., Yoon, S. K., Caban-Martinez, A. J., Wesley, M. G., Duque, J., Jeddy, Z., Stanford, J. B., Daugherty, M., Dixon, A., Burgess, J. L., Odean, M., … Meece, J. (2022). Detection and Stability of SARS-CoV-2 in Three Self-Collected Specimen Types: Flocked Midturbinate Swab (MTS) in Viral Transport Media, Foam MTS, and Saliva. Microbiology Spectrum, 10(3). https://doi.org/10.1128/spectrum.01033-22
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Rodino, K. G., Peaper, D. R., Kelly, B. J., Bushman, F., Marques, A., Adhikari, H., Tu, Z. J., Marrero Rolon, R., Westblade, L. F., Green, D. A., Berry, G. J., Wu, F., Annavajhala, M. K., Uhlemann, A.-C., Parikh, B. A., McMillen, T., Jani, K., Babady, N. E., Hahn, A. M., … Rhoads, D. D. (2022). Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1. Journal of Clinical Microbiology, 60(6). https://doi.org/10.1128/jcm.00600-22
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Liu, L., Iketani, S., Guo, Y., Reddem, E. R., Casner, R. G., Nair, M. S., Yu, J., Chan, J. F.-W., Wang, M., Cerutti, G., Li, Z., Morano, N. C., Castagna, C. D., Corredor, L., Chu, H., Yuan, S., Poon, V. K.-M., Chan, C. C.-S., Chen, Z., … Ho, D. D. (2022). An antibody class with a common CDRH3 motif broadly neutralizes sarbecoviruses. Science Translational Medicine, 14(646). https://doi.org/10.1126/scitranslmed.abn6859
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Vagelos College of Physicians and Surgeons; Department of Medicine; Division of Infectious Diseases; Aaron Diamond AIDS Research Center; Zuckerman Mind, Brain, and Behavior Institute; Department of Microbiology and Immunology; Department of Biochemistry and Molecular Biophysics; Institute of Comparative Medicine; Department of Pathology and Cell Biology
Eltobgy, M. M., Zani, A., Kenney, A. D., Estfanous, S., Kim, E., Badr, A., Carafice, C., Daily, K., Whitham, O., Pietrzak, M., Webb, A., Kawahara, J., Eddy, A. C., Denz, P., Lu, M., KC, M., Peeples, M. E., Li, J., Zhu, J., … Amer, A. O. (2022). Caspase-4/11 exacerbates disease severity in SARS–CoV-2 infection by promoting inflammation and immunothrombosis. Proceedings of the National Academy of Sciences, 119(21). https://doi.org/10.1073/pnas.2202012119
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Wiggen, T. D., Bohn, B., Ulrich, A. K., Stovitz, S. D., Strickland, A. J., Naumchik, B. M., Walsh, S., Smith, S., Baumgartner, B., Kline, S., Yendell, S., Hedberg, C., Beebe, T. J., & Demmer, R. T. (2022). SARS-CoV-2 seroprevalence among healthcare workers. PLOS ONE, 17(4), e0266410. https://doi.org/10.1371/journal.pone.0266410
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Iketani, S., Liu, L., Guo, Y., Liu, L., Chan, J. F.-W., Huang, Y., Wang, M., Luo, Y., Yu, J., Chu, H., Chik, K. K.-H., Yuen, T. T.-T., Yin, M. T., Sobieszczyk, M. E., Huang, Y., Yuen, K.-Y., Wang, H. H., Sheng, Z., & Ho, D. D. (2022). Antibody evasion properties of SARS-CoV-2 Omicron sublineages. Nature, 604(7906), 553–556. https://doi.org/10.1038/s41586-022-04594-4
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DeGrace, M. M., Ghedin, E., Frieman, M. B., Krammer, F., Grifoni, A., Alisoltani, A., Alter, G., Amara, R. R., Baric, R. S., Barouch, D. H., Bloom, J. D., Bloyet, L.-M., Bonenfant, G., Boon, A. C. M., Boritz, E. A., Bratt, D. L., Bricker, T. L., Brown, L., Buchser, W. J., … Suthar, M. S. (2022). Defining the risk of SARS-CoV-2 variants on immune protection. Nature, 605(7911), 640–652. https://doi.org/10.1038/s41586-022-04690-5
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Dey, S., Bose, A., Saha, S., Chakraborty, P., Ghalwash, M., Guzm X E N-Sáenz, A., Utro, F., Ng, K., Hu, J., Parida, L., & Sow, D. (2022). Impact of Clinical and Genomic Factors on COVID-19 Disease Severity. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2021, 378–387.
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Park, J., Foox, J., Hether, T., Danko, D. C., Warren, S., Kim, Y., Reeves, J., Butler, D. J., Mozsary, C., Rosiene, J., Shaiber, A., Afshin, E. E., MacKay, M., Rendeiro, A. F., Bram, Y., Chandar, V., Geiger, H., Craney, A., Velu, P., … Mason, C. E. (2022). System-wide transcriptome damage and tissue identity loss in COVID-19 patients. Cell Reports Medicine, 3(2), 100522. https://doi.org/10.1016/j.xcrm.2022.100522
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Fink, E. L., Robertson, C. L., Wainwright, M. S., Roa, J. D., Lovett, M. E., Stulce, C., Yacoub, M., Potera, R. M., Zivick, E., Holloway, A., Nagpal, A., Wellnitz, K., Czech, T., Even, K. M., Brunow de Carvalho, W., Rodriguez, I. S., Schwartz, S. P., Walker, T. C., Campos-Miño, S., … Schober, M. E. (2022). Prevalence and Risk Factors of Neurologic Manifestations in Hospitalized Children Diagnosed with Acute SARS-CoV-2 or MIS-C. Pediatric Neurology, 128, 33–44. https://doi.org/10.1016/j.pediatrneurol.2021.12.010
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Shakil, S. S., Emmons-Bell, S., Rutan, C., Walchok, J., Navi, B., Sharma, R., Sheth, K., Roth, G. A., & Elkind, M. S. V. (2022). Stroke Among Patients Hospitalized With COVID-19: Results From the American Heart Association COVID-19 Cardiovascular Disease Registry. Stroke, 53(3), 800–807. https://doi.org/10.1161/strokeaha.121.035270
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Ryan, M. S., Holmboe, E. S., & Chandra, S. (2022). Competency-Based Medical Education: Considering Its Past, Present, and a Post–COVID-19 Era. Academic Medicine, 97(3S), S90–S97. https://doi.org/10.1097/acm.0000000000004535
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Hahn-Schroeder, H., Honig, J., Smith, C., Chin, S., & Frazier, L. (2022). An Innovative Academic Practice Model for Clinical Nursing Education During the COVID-19 Pandemic. Academic Medicine, 97(3S), S19–S22. https://doi.org/10.1097/acm.0000000000004541
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Huang, J. J., Gaines, S. B., Amezcua, M. L., Lubell, T. R., Dayan, P. S., Dale, M., Boneparth, A. D., Hicar, M. D., Winchester, R., & Gorelik, M. (2022). Upregulation of type 1 conventional dendritic cells implicates antigen cross-presentation in multisystem inflammatory syndrome. Journal of Allergy and Clinical Immunology, 149(3), 912–922. https://doi.org/10.1016/j.jaci.2021.10.015
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Cerutti, G., Guo, Y., Liu, L., Liu, L., Zhang, Z., Luo, Y., Huang, Y., Wang, H. H., Ho, D. D., Sheng, Z., & Shapiro, L. (2022). Cryo-EM structure of the SARS-CoV-2 Omicron spike. Cell Reports, 38(9), 110428. https://doi.org/10.1016/j.celrep.2022.110428
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Zuckerman Mind, Brain, and Behavior Institute; Vagelos College of Physicians and Surgeons; Department of Medicine; Division of Infectious Diseases; Department of Systems Biology; Department of Pediatrics; Division of Critical Care and Hospital Medicine; Department of Pathology and Cell Biology; Department of Biochemistry and Molecular Biophysics; Aaron Diamond AIDS Research Center
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Cele, S., Jackson, L., Khoury, D. S., Khan, K., Moyo-Gwete, T., Tegally, H., San, J. E., Cromer, D., Scheepers, C., Amoako, D. G., Karim, F., Bernstein, M., Lustig, G., Archary, D., Smith, M., Ganga, Y., Jule, Z., Reedoy, K., Hwa, S.-H., … Sigal, A. (2021). Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization. Nature, 602(7898), 654–656. https://doi.org/10.1038/s41586-021-04387-1
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Nair, M. S., Huang, Y., Fidock, D. A., Towler, M. J., & Weathers, P. J. (2022). Artemisia annua L. hot-water extracts show potent activity in vitro against Covid-19 variants including delta. Journal of Ethnopharmacology, 284, 114797. https://doi.org/10.1016/j.jep.2021.114797
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Cele, S., Karim, F., Lustig, G., San, J. E., Hermanus, T., Tegally, H., Snyman, J., Moyo-Gwete, T., Wilkinson, E., Bernstein, M., Khan, K., Hwa, S.-H., Tilles, S. W., Singh, L., Giandhari, J., Mthabela, N., Mazibuko, M., Ganga, Y., Gosnell, B. I., … Sigal, A. (2022). SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape. Cell Host & Microbe, 30(2), 154-162.e5. https://doi.org/10.1016/j.chom.2022.01.005
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de Paula Eduardo, F., Bezinelli, L. M., de Araujo, C. A. R., Moraes, J. V. V., Birbrair, A., Pinho, J. R. R., Hamerschlak, N., Al-Hashimi, I., & Heller, D. (2021). Self-collected unstimulated saliva, oral swab, and nasopharyngeal swab specimens in the detection of SARS-CoV-2. Clinical Oral Investigations, 26(2), 1561–1567. https://doi.org/10.1007/s00784-021-04129-7
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Tovia-Brodie, O., Rav Acha, M., Belhassen, B., Gasperetti, A., Schiavone, M., Forleo, G. B., Guevara-Valdivia, M. E., Ruiz, D. V., Lellouche, N., Hamon, D., Castagno, D., Bellettini, M., De Ferrari, G. M., Laredo, M., Carvès, J.-B., Ignatiuk, B., Pasquetto, G., De Filippo, P., Malanchini, G., … Michowitz, Y. (2022). Implantation of cardiac electronic devices in active COVID-19 patients: Results from an international survey. Heart Rhythm, 19(2), 206–216. https://doi.org/10.1016/j.hrthm.2021.10.020
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Brener, M. I., Hulke, M. L., Fukuma, N., Golob, S., Zilinyi, R. S., Zhou, Z., Tzimas, C., Russo, I., McGroder, C., Pfeiffer, R. D., Chong, A., Zhang, G., Burkhoff, D., Leon, M. B., Maurer, M. S., Moses, J. W., Uhlemann, A.-C., Hibshoosh, H., Uriel, N., … Tsai, E. J. (2022). Clinico-histopathologic and single-nuclei RNA-sequencing insights into cardiac injury and microthrombi in critical COVID-19. JCI Insight, 7(2). https://doi.org/10.1172/jci.insight.154633
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Funk, A. L., Florin, T. A., Kuppermann, N., Tancredi, D. J., Xie, J., Kim, K., Neuman, M. I., Ambroggio, L., Plint, A. C., Mintegi, S., Klassen, T. P., Salvadori, M. I., Malley, R., Payne, D. C., Simon, N.-J., Yock-Corrales, A., Nebhrajani, J. R., Chaudhari, P. P., Breslin, K. A., … Marty Placencia, D. (2022). Outcomes of SARS-CoV-2–Positive Youths Tested in Emergency Departments. JAMA Network Open, 5(1), e2142322. https://doi.org/10.1001/jamanetworkopen.2021.42322
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Epstein, S., Xia, Z., Lee, A. J., Dahl, M., Edwards, K., Levit, E., Longbrake, E. E., Perrone, C., Kavak, K., Weinstock-Guttman, B., Diallo, F., Ricci, A., Riley, C. S., De Jager, P. L., Farber, R., & Wesley, S. F. (2022). Vaccination Against SARS-CoV-2 in Neuroinflammatory Disease: Early Safety/Tolerability Data. Multiple Sclerosis and Related Disorders, 57, 103433. https://doi.org/10.1016/j.msard.2021.103433
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Chiu, L., Lo, C.-H., Shen, M., Chiu, N., Aggarwal, R., Lee, J., Choi, Y.-G., Lam, H., Prsic, E. H., Chow, R., & Shin, H. J. (2021). Colchicine use in patients with COVID-19: A systematic review and meta-analysis. PLOS ONE, 16(12), e0261358. https://doi.org/10.1371/journal.pone.0261358
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Yalcinkaya, M., Liu, W., Islam, M. N., Kotini, A. G., Gusarova, G. A., Fidler, T. P., Papapetrou, E. P., Bhattacharya, J., Wang, N., & Tall, A. R. (2021). Modulation of the NLRP3 inflammasome by Sars-CoV-2 Envelope protein. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-04133-7
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Omer, S. B., Benjamin, R. M., Brewer, N. T., Buttenheim, A. M., Callaghan, T., Caplan, A., Carpiano, R. M., Clinton, C., DiResta, R., Elharake, J. A., Flowers, L. C., Galvani, A. P., Lakshmanan, R., Maldonado, Y. A., McFadden, S. M., Mello, M. M., Opel, D. J., Reiss, D. R., Salmon, D. A., … Hotez, P. J. (2021). Promoting COVID-19 vaccine acceptance: recommendations from the Lancet Commission on Vaccine Refusal, Acceptance, and Demand in the USA. The Lancet, 398(10317), 2186–2192. https://doi.org/10.1016/s0140-6736(21)02507-1
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Wang, J., Guo, C., Cai, L., Liao, C., Yi, H., Li, Q., Hu, H., Deng, Q., Lu, Y., Guo, Z., Chen, Z., & Lu, J. (2021). Pre-Existing Cross-Reactive Antibody Responses Do Not Significantly Impact Inactivated COVID-19 Vaccine-Induced Neutralization. Frontiers in Immunology, 12. https://doi.org/10.3389/fimmu.2021.772511
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Karim, S. S. A., & Karim, Q. A. (2021). Omicron SARS-CoV-2 variant: a new chapter in the COVID-19 pandemic. The Lancet, 398(10317), 2126–2128. https://doi.org/10.1016/s0140-6736(21)02758-6
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Subramanian, K., Solomon, N., Faillace, R., Menon, V., Raiszadeh, F., & Brandeis, G. (2021). Effect of parenteral nutrition in oxygen escalation/de-escalation in SARS-CoV-2 infected patients who are pre-intubation: A multicenter, observational study. Clinical Nutrition ESPEN, 46, 206–209. https://doi.org/10.1016/j.clnesp.2021.10.007
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Ke, R., Zitzmann, C., Ho, D. D., Ribeiro, R. M., & Perelson, A. S. (2021). In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness. Proceedings of the National Academy of Sciences, 118(49). https://doi.org/10.1073/pnas.2111477118
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Nakanishi, T., Pigazzini, S., Degenhardt, F., Cordioli, M., Butler-Laporte, G., Maya-Miles, D., Bujanda, L., Bouysran, Y., Niemi, M. E. K., Palom, A., Ellinghaus, D., Khan, A., Martínez-Bueno, M., Rolker, S., Amitrano, S., Roade Tato, L., Fava, F., Spinner, C. D., Prati, D., … Ganna, A. (2021). Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality. Journal of Clinical Investigation, 131(23). https://doi.org/10.1172/jci152386
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Mathema, B., Chen, L., Chow, K. F., Zhao, Y., Zody, M. C., Mediavilla, J. R., Cunningham, M. H., Composto, K., Lee, A., Oschwald, D. M., Germer, S., Fennessey, S., Patel, K., Wilson, D., Cassell, A., Pascual, L., Ip, A., Corvelo, A., Dar, S., … Kreiswirth, B. N. (2021). Postvaccination SARS-COV-2 among Health Care Workers in New Jersey: A Genomic Epidemiological Study. Microbiology Spectrum, 9(3). https://doi.org/10.1128/spectrum.01882-21
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Ferren, M., Favède, V., Decimo, D., Iampietro, M., Lieberman, N. A. P., Weickert, J.-L., Pelissier, R., Mazelier, M., Terrier, O., Moscona, A., Porotto, M., Greninger, A. L., Messaddeq, N., Horvat, B., & Mathieu, C. (2021). Hamster organotypic modeling of SARS-CoV-2 lung and brainstem infection. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-26096-z
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Yang, W., & Shaman, J. (2021). Development of a model-inference system for estimating epidemiological characteristics of SARS-CoV-2 variants of concern. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-25913-9
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Desai, A. D., Lavelle, M., Boursiquot, B. C., & Wan, E. Y. (2022). Long-term complications of COVID-19. American Journal of Physiology-Cell Physiology, 322(1), C1–C11. https://doi.org/10.1152/ajpcell.00375.2021
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Kumar, A., Parashar, R., Kumar, S., Faiq, M. A., Kumari, C., Kulandhasamy, M., Narayan, R. K., Jha, R. K., Singh, H. N., Prasoon, P., Pandey, S. N., & Kant, K. (2021). Emerging SARS‐CoV‐2 variants can potentially break set epidemiological barriers in COVID‐19. Journal of Medical Virology, 94(4), 1300–1314. Portico. https://doi.org/10.1002/jmv.27467
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Day, J. D., Park, S., Ranard, B. L., Singh, H., Chow, C. C., & Vodovotz, Y. (2021). Divergent COVID-19 Disease Trajectories Predicted by a DAMP-Centered Immune Network Model. Frontiers in Immunology, 12. https://doi.org/10.3389/fimmu.2021.754127
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Nasa, P., Azoulay, E., Chakrabarti, A., Divatia, J. V., Jain, R., Rodrigues, C., Rosenthal, V. D., Alhazzani, W., Arabi, Y. M., Bakker, J., Bassetti, M., De Waele, J., Dimopoulos, G., Du, B., Einav, S., Evans, L., Finfer, S., Guérin, C., Hammond, N. E., … Myatra, S. N. (2022). Infection control in the intensive care unit: expert consensus statements for SARS-CoV-2 using a Delphi method. The Lancet Infectious Diseases, 22(3), e74–e87. https://doi.org/10.1016/s1473-3099(21)00626-5
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Roy, S., & Demmer, R. T. (2022). Impaired glucose regulation, SARS-CoV-2 infections and adverse COVID-19 outcomes. Translational Research, 241, 52–69. https://doi.org/10.1016/j.trsl.2021.11.002
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Poon, M. M. L., Rybkina, K., Kato, Y., Kubota, M., Matsumoto, R., Bloom, N. I., Zhang, Z., Hastie, K. M., Grifoni, A., Weiskopf, D., Wells, S. B., Ural, B. B., Lam, N., Szabo, P. A., Dogra, P., Lee, Y. S., Gray, J. I., Bradley, M. C., Brusko, M. A., … Farber, D. L. (2021). SARS-CoV-2 infection generates tissue-localized immunological memory in humans. Science Immunology, 6(65). https://doi.org/10.1126/sciimmunol.abl9105
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Werzberger, A., Carreño, J. M., Team, S. S., Polinger, A., Krammer, F., & Zachariah, P. (2021). Household level SARS-CoV-2 sero-epidemiology in a high prevalence group of adults and children-implications for community infection control. American Journal of Infection Control, 49(11), 1438–1440. https://doi.org/10.1016/j.ajic.2021.08.015
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Hastie, K. M., Li, H., Bedinger, D., Schendel, S. L., Dennison, S. M., Li, K., Rayaprolu, V., Yu, X., Mann, C., Zandonatti, M., Diaz Avalos, R., Zyla, D., Buck, T., Hui, S., Shaffer, K., Hariharan, C., Yin, J., Olmedillas, E., Enriquez, A., … Saphire, E. O. (2021). Defining variant-resistant epitopes targeted by SARS-CoV-2 antibodies: A global consortium study. Science, 374(6566), 472–478. https://doi.org/10.1126/science.abh2315
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