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Ranking reprogramming factors for cell differentiation

Record Created:

Thursday, September 12, 2024 - 09:42

Hammelman, J., Patel, T., Closser, M., Wichterle, H., & Gifford, D. (2022). Ranking reprogramming factors for cell differentiation. Nature Methods, 19(7), 812–822. https://doi.org/10.1038/s41592-022-01522-2

Authors:

Jennifer Hammelman

Tulsi Patel

Michael Closser

Hynek Wichterle

David Gifford

Affiliated Authors:

Tulsi Patel

Michael Closser

Hynek Wichterle

Columbia Affiliation:

Subjects:

Cellular Reprogramming (MeSH)

Chromatin (MeSH)

Grants:

R01HG008754 (NIH – National Human Genome Research Institute)

T32GM087237 (NIH – National Institute of General Medical Sciences)

R01NS109217 (NIH – National Institute of Neurological Disorders and Stroke)

R01NS116141 (NIH – National Institute of Neurological Disorders and Stroke)

K99NS121136 (NIH – National Institute of Neurological Disorders and Stroke)

F32NS105372 (NIH – National Institute of Neurological Disorders and Stroke)

Publication Type:

Article

Unique ID:

10.1038/s41592-022-01522-2

PMID:

35710610

DOI:

10.1038/s41592-022-01522-2

Journal:

Nature Methods

Publication Date:

2022-07-01

Data Source:

Scopus

Source Link:

An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity

Record Created:

Thursday, December 19, 2024 - 08:48

Closser, M., Guo, Y., Wang, P., Patel, T., Jang, S., Hammelman, J., De Nooij, J. C., Kopunova, R., Mazzoni, E. O., Ruan, Y., Gifford, D. K., & Wichterle, H. (2022). An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity. Neuron, 110(1), 70-85.e6. https://doi.org/10.1016/j.neuron.2021.10.014

Authors:

Michael Closser

Yuchun Guo

Ping Wang

Tulsi Patel

Sumin Jang

Jennifer Hammelman

Joriene C. De Nooij

Rachel Kopunova

Esteban O. Mazzoni

Yijun Ruan

David K. Gifford

Hynek Wichterle

Affiliated Authors:

Michael Closser

Tulsi Patel

Sumin Jang

Joriene C. De Nooij

Rachel Kopunova

Hynek Wichterle

Columbia Affiliation:

Subjects:

Enhancer Elements, Genetic (MeSH)

Vertebrates (MeSH)

Author Keywords:

isl1

lhx3

cell fate specification

cellular diversity

chromatin interactions

enhancers

gene deserts

gene regulation

neuronal development

noncoding dna

Grants:

R01HG008363 (NIH – National Human Genome Research Institute)

T32GM087237 (NIH – National Institute of General Medical Sciences)

R01NS116141 (NIH – National Institute of Neurological Disorders and Stroke)

R01NS109217 (NIH – National Institute of Neurological Disorders and Stroke)

R01NS106715 (NIH – National Institute of Neurological Disorders and Stroke)

R01NS100897 (NIH – National Institute of Neurological Disorders and Stroke)

Publication Type:

Article

Unique ID:

10.1016/j.neuron.2021.10.014

PMID:

34727520

DOI:

10.1016/j.neuron.2021.10.014

Journal:

Neuron

Publication Date:

2022-01-05

Data Source:

Scopus

Source Link:

Evolution of delayed resistance to immunotherapy in a melanoma responder

Record Created:

Wednesday, February 19, 2025 - 11:46

Liu, D., Lin, J.-R., Robitschek, E. J., Kasumova, G. G., Heyde, A., Shi, A., Kraya, A., Zhang, G., Moll, T., Frederick, D. T., Chen, Y.-A., Wang, S., Schapiro, D., Ho, L.-L., Bi, K., Sahu, A., Mei, S., Miao, B., Sharova, T., … Boland, G. M. (2021). Evolution of delayed resistance to immunotherapy in a melanoma responder. Nature Medicine, 27(6), 985–992. https://doi.org/10.1038/s41591-021-01331-8

Authors:

David Liu

Jia-Ren Lin

Emily J. Robitschek

Gyulnara G. Kasumova

Alex Heyde

Alvin Shi

Adam Kraya

Gao Zhang

Tabea Moll

Dennie T. Frederick

Yu-An Chen

Shu Wang

Denis Schapiro

Li-Lun Ho

Kevin Bi

Avinash Sahu

Shaolin Mei

Benchun Miao

Tatyana Sharova

Christopher Alvarez-Breckenridge

Jackson H. Stocking

Tommy Kim

Riley Fadden

Donald Lawrence

Mai P. Hoang

Daniel P. Cahill

Mohsen Malehmir

Martin A. Nowak

Priscilla K. Brastianos

Christine G. Lian

Eytan Ruppin

Benjamin Izar

Meenhard Herlyn

Eliezer M. Van Allen

Katherine Nathanson

Keith T. Flaherty

Ryan J. Sullivan

Manolis Kellis

Peter K. Sorger

Genevieve M. Boland

Affiliated Authors:

Benjamin Izar

Columbia Affiliation:

Subjects:

B7-H1 Antigen (MeSH)

Immune Checkpoint Inhibitors (MeSH)

Melanoma (MeSH)

Nerve Tissue Proteins (MeSH)

Receptors, Nerve Growth Factor (MeSH)

Grants:

ZIABC011803 (NIH – National Cancer Institute)

R01CA227388 (NIH – National Cancer Institute)

U54CA225088 (NIH – National Cancer Institute)

P30CA010815 (NIH – National Cancer Institute)

P01CA114046 (NIH – National Cancer Institute)

U54CA224070 (NIH – National Cancer Institute)

K08CA222663 (NIH – National Cancer Institute)

P50CA174523 (NIH – National Cancer Institute)

K08CA234458 (NIH – National Cancer Institute)

T32GM087237 (NIH – National Institute of General Medical Sciences)

Publication Type:

Article

Unique ID:

10.1038/s41591-021-01331-8

PMID:

33941922

DOI:

10.1038/s41591-021-01331-8

Journal:

Nature Medicine

Publication Date:

2021-06-01

Data Source:

Scopus

Source Link: