Gastrointestinal Microbiome

Displaying 1 - 31 of 31CSV
Mitra, D., Armijo, G. K., Ober, E. H., Baker, S. M., Turner, H. C., & Broustas, C. G. (2025). MIIST305 mitigates gastrointestinal acute radiation syndrome injury and ameliorates radiation-induced gut microbiome dysbiosis. Gut Microbes, 17(1). https://doi.org/10.1080/19490976.2025.2458189
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Park, H., Lynch, E., Tillman, A., Lewis, K., Jin, Z., Uhlemann, A.-C., Abrams, J. A., & Freedberg, D. E. (2025). A phase 2 randomized, placebo-controlled trial of inulin for the prevention of gut pathogen colonization and infection among patients admitted to the intensive care unit for sepsis. Critical Care, 29(1). https://doi.org/10.1186/s13054-024-05232-3
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Gao, F., Shen, Y., Wu, H., Laue, H. E., Lau, F. K., Gillet, V., Lai, Y., Shrubsole, M. J., Prada, D., Zhang, W., Liu, Z., Bellenger, J.-P., Takser, L., & Baccarelli, A. A. (2024). Associations of Stool Metal Exposures with Childhood Gut Microbiome Multiomics Profiles in a Prospective Birth Cohort Study. Environmental Science & Technology, 58(50), 22053–22063. https://doi.org/10.1021/acs.est.4c09642
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Kato, R., Yamamoto, T., Ogata, H., Miyata, K., Hayashi, S., Gershon, M. D., & Kadowaki, M. (2024). Indigenous gut microbiota constitutively drive release of ciliary neurotrophic factor from mucosal enteric glia to maintain the homeostasis of enteric neural circuits. Frontiers in Immunology, 15. https://doi.org/10.3389/fimmu.2024.1372670
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Yuzefpolskaya, M., Bohn, B., Ladanyi, A., Pinsino, A., Braghieri, L., Carey, M. R., Clerkin, K., Sayer, G. T., Latif, F., Koji, T., Uriel, N., Nandakumar, R., Uhlemann, A.-C., Colombo, P. C., & Demmer, R. T. (2024). Alterations in the sarcopenia index are associated with inflammation, gut, and oral microbiota among heart failure, left ventricular assist device, and heart transplant patients. The Journal of Heart and Lung Transplantation, 43(9), 1395–1408. https://doi.org/10.1016/j.healun.2024.04.069
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Chen, X., Zhang, J., Yin, N., Wele, P., Li, F., Dave, S., Lin, J., Xiao, H., & Wu, X. (2023). Resveratrol in disease prevention and health promotion: A role of the gut microbiome. Critical Reviews in Food Science and Nutrition, 64(17), 5878–5895. https://doi.org/10.1080/10408398.2022.2159921
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Shishani, R., Wang, A., Lyo, V., Nandakumar, R., & Cummings, B. P. (2024). Vertical Sleeve Gastrectomy Reduces Gut Luminal Deoxycholic Acid Concentrations in Mice. Obesity Surgery, 34(7), 2483–2491. https://doi.org/10.1007/s11695-024-07288-0
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Reuter, M. A., Tucker, M., Marfori, Z., Shishani, R., Bustamante, J. M., Moreno, R., Goodson, M. L., Ehrlich, A., Taha, A. Y., Lein, P. J., Joshi, N., Brito, I., Durbin-Johnson, B., Nandakumar, R., & Cummings, B. P. (2024). Dietary resistant starch supplementation increases gut luminal deoxycholic acid abundance in mice. Gut Microbes, 16(1). https://doi.org/10.1080/19490976.2024.2315632
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Weh, K. M., Howard, C. L., Zhang, Y., Tripp, B. A., Clarke, J. L., Howell, A. B., Rubenstein, J. H., Abrams, J. A., Westerhoff, M., & Kresty, L. A. (2024). Prebiotic proanthocyanidins inhibit bile reflux-induced esophageal adenocarcinoma through reshaping the gut microbiome and esophageal metabolome. JCI Insight. https://doi.org/10.1172/jci.insight.168112
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Sung, C., Park, C. G., Maienschein-Cline, M., Chlipala, G., Green, S., Doorenbos, A., Fink, A., Bronas, U., & Lockwood, M. (2024). Associations Between Gut Microbial Features and Sickness Symptoms in Kidney Transplant Recipients. Biological Research For Nursing, 26(3), 368–379. https://doi.org/10.1177/10998004241227560
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Columbia Affiliation
Xu, H., Wang, T., Miao, Y., Qian, M., Yang, Y., & Wang, S. (2024). MK-BMC: a Multi-Kernel framework with Boosted distance metrics for Microbiome data for Classification. Bioinformatics, 40(1). https://doi.org/10.1093/bioinformatics/btad757
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Cui, W., Guo, M., Liu, D., Xiao, P., Yang, C., Huang, H., Liang, C., Yang, Y., Fu, X., Zhang, Y., Liu, J., Shi, S., Cong, J., Han, Z., Xu, Y., Du, L., Yin, C., Zhang, Y., Sun, J., … Chu, B. (2024). Gut microbial metabolite facilitates colorectal cancer development via ferroptosis inhibition. Nature Cell Biology, 26(1), 124–137. https://doi.org/10.1038/s41556-023-01314-6
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Yong, G. J. M., Porsche, C. E., Sitarik, A. R., Fujimura, K. E., McCauley, K., Nguyen, D. T., Levin, A. M., Woodcroft, K. J., Ownby, D. R., Rundle, A. G., Johnson, C. C., Cassidy-Bushrow, A., & Lynch, S. V. (2023). Precocious infant fecal microbiome promotes enterocyte barrier dysfuction, altered neuroendocrine signaling and associates with increased childhood obesity risk. Gut Microbes, 16(1). https://doi.org/10.1080/19490976.2023.2290661
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Liang, X., Zhang, Z., Wang, H., Lu, X., Li, W., Lu, H., Roy, A., Shen, X., Irwin, D. M., & Shen, Y. (2023). Early-life prophylactic antibiotic treatment disturbs the stability of the gut microbiota and increases susceptibility to H9N2 AIV in chicks. Microbiome, 11(1). https://doi.org/10.1186/s40168-023-01609-8
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Columbia Affiliation
Brockmann, L., Tran, A., Huang, Y., Edwards, M., Ronda, C., Wang, H. H., & Ivanov, I. I. (2023). Intestinal microbiota-specific Th17 cells possess regulatory properties and suppress effector T cells via c-MAF and IL-10. Immunity, 56(12), 2719-2735.e7. https://doi.org/10.1016/j.immuni.2023.11.003
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Huang, Z., Li, Y., Park, H., Ho, M., Bhardwaj, K., Sugimura, N., Lee, H. W., Meng, H., Ebert, M. P., Chao, K., Burgermeister, E., Bhatt, A. P., Shetty, S. A., Li, K., Wen, W., & Zuo, T. (2023). Unveiling and harnessing the human gut microbiome in the rising burden of non-communicable diseases during urbanization. Gut Microbes, 15(1). https://doi.org/10.1080/19490976.2023.2237645
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Zhang, Y., Shen, Y., Liufu, N., Liu, L., Li, W., Shi, Z., Zheng, H., Mei, X., Chen, C.-Y., Jiang, Z., Abtahi, S., Dong, Y., Liang, F., Shi, Y., Cheng, L. L., Yang, G., Kang, J. X., Wilkinson, J. E., & Xie, Z. (2023). Transmission of Alzheimer’s disease-associated microbiota dysbiosis and its impact on cognitive function: evidence from mice and patients. Molecular Psychiatry, 28(10), 4421–4437. https://doi.org/10.1038/s41380-023-02216-7
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Baldwin-Hunter, B. L., Rozenberg, F. D., Annavajhala, M. K., Park, H., DiMango, E. A., Keating, C. L., Uhlemann, A.-C., & Abrams, J. A. (2023). The gut microbiome, short chain fatty acids, and related metabolites in cystic fibrosis patients with and without colonic adenomas. Journal of Cystic Fibrosis, 22(4), 738–744. https://doi.org/10.1016/j.jcf.2023.01.013
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Sumida, K., Pierre, J. F., Yuzefpolskaya, M., Colombo, P. C., Demmer, R. T., & Kovesdy, C. P. (2023). Gut Microbiota-Targeted Interventions in the Management of Chronic Kidney Disease. Seminars in Nephrology, 43(2), 151408. https://doi.org/10.1016/j.semnephrol.2023.151408
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Yuzefpolskaya, M., Bohn, B., Ladanyi, A., Khoruts, A., Colombo, P. C., & Demmer, R. T. (2023). Oral and gut microbiome alterations in heart failure: Epidemiology, pathogenesis and response to advanced heart failure therapies. The Journal of Heart and Lung Transplantation, 42(3), 291–300. https://doi.org/10.1016/j.healun.2022.12.009
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Guo, C., Che, X., Briese, T., Ranjan, A., Allicock, O., Yates, R. A., Cheng, A., March, D., Hornig, M., Komaroff, A. L., Levine, S., Bateman, L., Vernon, S. D., Klimas, N. G., Montoya, J. G., Peterson, D. L., Lipkin, W. I., & Williams, B. L. (2023). Deficient butyrate-producing capacity in the gut microbiome is associated with bacterial network disturbances and fatigue symptoms in ME/CFS. Cell Host & Microbe, 31(2), 288-304.e8. https://doi.org/10.1016/j.chom.2023.01.004
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Dang, J. T., Mocanu, V., Park, H., Laffin, M., Hotte, N., Karmali, S., Birch, D. W., & Madsen, K. L. (2022). Roux-en-Y gastric bypass and sleeve gastrectomy induce substantial and persistent changes in microbial communities and metabolic pathways. Gut Microbes, 14(1). https://doi.org/10.1080/19490976.2022.2050636
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Campana, A. M., Laue, H. E., Shen, Y., Shrubsole, M. J., & Baccarelli, A. A. (2022). Assessing the role of the gut microbiome at the interface between environmental chemical exposures and human health: Current knowledge and challenges. Environmental Pollution, 315, 120380. https://doi.org/10.1016/j.envpol.2022.120380
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Cheng, X., Zhang, Y., Li, Y., Wu, Q., Wu, J., Park, S.-K., Guo, C., & Lu, J. (2022). Meta-analysis of 16S rRNA microbial data identified alterations of the gut microbiota in COVID-19 patients during the acute and recovery phases. BMC Microbiology, 22(1). https://doi.org/10.1186/s12866-022-02686-9
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Blackett, J. W., Sun, Y., Purpura, L., Margolis, K. G., Elkind, M. S. V., O’Byrne, S., Wainberg, M., Abrams, J. A., Wang, H. H., Chang, L., & Freedberg, D. E. (2022). DECREASED GUT MICROBIOME TRYPTOPHAN METABOLISM AND SEROTONERGIC SIGNALING IN PATIENTS WITH PERSISTENT MENTAL HEALTH AND GASTROINTESTINAL SYMPTOMS AFTER COVID-19. Clinical and Translational Gastroenterology. https://doi.org/10.14309/ctg.0000000000000524
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Laue, H. E., Shen, Y., Bloomquist, T. R., Wu, H., Brennan, K. J. M., Cassoulet, R., Wilkie, E., Gillet, V., Desautels, A.-S., Abdelouahab, N., Bellenger, J. P., Burris, H. H., Coull, B. A., Weisskopf, M. G., Zhang, W., Takser, L., & Baccarelli, A. A. (2022). In Utero Exposure to Caffeine and Acetaminophen, the Gut Microbiome, and Neurodevelopmental Outcomes: A Prospective Birth Cohort Study. International Journal of Environmental Research and Public Health, 19(15), 9357. https://doi.org/10.3390/ijerph19159357
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Yao, M., Fei, Y., Zhang, S., Qiu, B., Zhu, L., Li, F., Berglund, B., Xiao, H., & Li, L. (2022). Gut Microbiota Composition in Relation to the Metabolism of Oral Administrated Resveratrol. Nutrients, 14(5), 1013. https://doi.org/10.3390/nu14051013
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Dreisbach, C., Morgan, H., Cochran, C., Gyamfi, A., Henderson, W. A., & Prescott, S. (2022). Metabolic and Microbial Changes Associated With Diet and Obesity During Pregnancy: What Can We Learn From Animal Studies? Frontiers in Cellular and Infection Microbiology, 11. https://doi.org/10.3389/fcimb.2021.795924
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Columbia Affiliation
Freedberg, D. E., Richardson, M., Nattakom, M., Cheung, J., Lynch, E., Zachariah, P., & Wang, H. H. (2022). Are There Bad ICU Rooms? Temporal Relationship between Patient and ICU Room Microbiome, and Influence on Vancomycin-Resistant Enterococcus Colonization. MSphere, 7(1). https://doi.org/10.1128/msphere.01007-21
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Shen, Y., Laue, H. E., Shrubsole, M. J., Wu, H., Bloomquist, T. R., Larouche, A., Zhao, K., Gao, F., Boivin, A., Prada, D., Hunting, D. J., Gillet, V., Takser, L., & Baccarelli, A. A. (2022). Associations of Childhood and Perinatal Blood Metals with Children’s Gut Microbiomes in a Canadian Gestation Cohort. Environmental Health Perspectives, 130(1). https://doi.org/10.1289/ehp9674
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