Genome Biology
Displaying 1 - 11 of 11
Li, X., Melo, L. A. N., & Bussemaker, H. J. (2024). Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data. Genome Biology, 25(1). https://doi.org/10.1186/s13059-024-03424-2
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Columbia Affiliation
Shipman, G. A., Padilla, R., Horth, C., Hu, B., Bareke, E., Vitorino, F. N., Gongora, J. M., Garcia, B. A., Lu, C., & Majewski, J. (2024). Systematic perturbations of SETD2, NSD1, NSD2, NSD3, and ASH1L reveal their distinct contributions to H3K36 methylation. Genome Biology, 25(1). https://doi.org/10.1186/s13059-024-03415-3
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Columbia Affiliation
Mellis, I. A., Melzer, M. E., Bodkin, N., & Goyal, Y. (2024). Prevalence of and gene regulatory constraints on transcriptional adaptation in single cells. Genome Biology, 25(1). https://doi.org/10.1186/s13059-024-03351-2
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Columbia Affiliation
Kabeer, F., Tran, H., Andronescu, M., Singh, G., Lee, H., Salehi, S., Wang, B., Biele, J., Brimhall, J., Gee, D., Cerda, V., O’Flanagan, C., Algara, T., Kono, T., Beatty, S., Zaikova, E., Lai, D., Lee, E., … Moore, R. (2024). Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers. Genome Biology, 25(1). https://doi.org/10.1186/s13059-024-03318-3
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Columbia Affiliation
Bradfield, J. P., Kember, R. L., Ulrich, A., Balkhiyarova, Z., Alyass, A., Aris, I. M., Bell, J. A., Broadaway, K. A., Chen, Z., Chai, J.-F., Davies, N. M., Fernandez-Orth, D., Bustamante, M., Fore, R., Ganguli, A., Heiskala, A., Hottenga, J.-J., Íñiguez, C., … Kobes, S. (2024). Trans-ancestral genome-wide association study of longitudinal pubertal height growth and shared heritability with adult health outcomes. Genome Biology, 25(1). https://doi.org/10.1186/s13059-023-03136-z
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Columbia Affiliation
Yang, L., Lyu, J., Li, X., Guo, G., Zhou, X., Chen, T., Lin, Y., & Li, T. (2024). Phase separation as a possible mechanism for dosage sensitivity. Genome Biology, 25(1). https://doi.org/10.1186/s13059-023-03128-z
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Columbia Affiliation
Su, J., Reynier, J.-B., Fu, X., Zhong, G., Jiang, J., Escalante, R. S., Wang, Y., Aparicio, L., Izar, B., Knowles, D. A., & Rabadan, R. (2023). Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data. Genome Biology, 24(1). https://doi.org/10.1186/s13059-023-03138-x
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Columbia Affiliation
Ma, S., Wang, C., Khan, A., Liu, L., Dalgleish, J., Kiryluk, K., He, Z., & Ionita-Laza, I. (2023). BIGKnock: fine-mapping gene-based associations via knockoff analysis of biobank-scale data. Genome Biology, 24(1). https://doi.org/10.1186/s13059-023-02864-6
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Columbia Affiliation
Wang, Y., Wang, W., Liu, D., Hou, W., Zhou, T., & Ji, Z. (2023). GeneSegNet: a deep learning framework for cell segmentation by integrating gene expression and imaging. Genome Biology, 24(1). https://doi.org/10.1186/s13059-023-03054-0
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Columbia Affiliation
Kanoni, S., Graham, S. E., Wang, Y., Surakka, I., Ramdas, S., Zhu, X., Clarke, S. L., Bhatti, K. F., Vedantam, S., Winkler, T. W., Locke, A. E., Marouli, E., Zajac, G. J. M., Wu, K.-H. H., Ntalla, I., Hui, Q., Klarin, D., Hilliard, A. T., Wang, Z., … Peloso, G. M. (2022). Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis. Genome Biology, 23(1). https://doi.org/10.1186/s13059-022-02837-1
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Columbia Affiliation
Kim, M. S., Naidoo, D., Hazra, U., Quiver, M. H., Chen, W. C., Simonti, C. N., Kachambwa, P., Harlemon, M., Agalliu, I., Baichoo, S., Fernandez, P., Hsing, A. W., Jalloh, M., Gueye, S. M., Niang, L., Diop, H., Ndoye, M., Snyper, N. Y., Adusei, B., … Lachance, J. (2022). Testing the generalizability of ancestry-specific polygenic risk scores to predict prostate cancer in sub-Saharan Africa. Genome Biology, 23(1). https://doi.org/10.1186/s13059-022-02766-z
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Columbia Affiliation