Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data

Su, J., Reynier, J.-B., Fu, X., Zhong, G., Jiang, J., Escalante, R. S., Wang, Y., Aparicio, L., Izar, B., Knowles, D. A., & Rabadan, R. (2023). Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data. Genome Biology, 24(1). https://doi.org/10.1186/s13059-023-03138-x
Authors:
Jiayu Su
Jean-Baptiste Reynier
Xi Fu
Guojie Zhong
Jiahao Jiang
Rydberg Supo Escalante
Yiping Wang
Luis Aparicio
Benjamin Izar
David A Knowles
Raul Rabadan
Affiliated Authors:
Jiayu Su
Jean-Baptiste Reynier
Xi Fu
Guojie Zhong
Rydberg Supo Escalante
Yiping Wang
Luis Aparicio
Benjamin Izar
David A Knowles
Raul Rabadan
Columbia Affiliation:
Subjects:
Fibroblasts (MeSH)
Prostate (MeSH)
Author Keywords:
cell-type deconvolution
data imputation
dimensionality reduction
joint analysis of single-cell and spatial data
reference mapping
spatial omics
spatial prior
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Publication Type:
Article
Unique ID:
10.1186/s13059-023-03138-x
PMID:
38110959
DOI:
10.1186/s13059-023-03138-x
Journal:
Genome Biology
Publication Date:
Data Source:
PubMed
Source Link:
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Record Created: