Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data

Li, X., Melo, L. A. N., & Bussemaker, H. J. (2024). Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data. Genome Biology, 25(1). https://doi.org/10.1186/s13059-024-03424-2
Authors:
Xiaoting Li
Lucas A. N. Melo
Harmen J. Bussemaker
Affiliated Authors:
Xiaoting Li
Lucas A. N. Melo
Harmen J. Bussemaker
Columbia Affiliation:
Author Keywords:
gene expression regulation
non-coding variants
transcription factors
allele-specific binding
chip-seq
ctcf
motif discovery
biophysically interpretable machine learning
statistical modeling
chip-exo
cut&tag
ebf1
pu.1/spi1
elink
Publication Type:
Article
Unique ID:
10.1186/s13059-024-03424-2
PMID:
39482734
DOI:
10.1186/s13059-024-03424-2
Journal:
Genome Biology
Publication Date:
Data Source:
Web of Science
Source Link:
View Web of Science Record

Record Created: