Nature Microbiology
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Fierer, N., Leung, P. M., Lappan, R., Eisenhofer, R., Ricci, F., Holland, S. I., Dragone, N., Blackall, L. L., Dong, X., Dorador, C., Ferrari, B. C., Goordial, J., Holmes, S. P., Inagaki, F., Korem, T., Li, S. S., Makhalanyane, T. P., Metcalf, J. L., Nagarajan, N., … Greening, C. (2025). Guidelines for preventing and reporting contamination in low-biomass microbiome studies. Nature Microbiology. https://doi.org/10.1038/s41564-025-02035-2
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Rimkute, I., Olia, A. S., Suleiman, M., Woods, K. D., Bylund, T., Morano, N. C., Tully, E. S., Verardi, R., Bao, S., Beddall, M. H., Chaimongkol, N., Donaldson, M. M., Du, R., Dulan, C. N. M., Gorman, J., Henry, A. R., Schramm, C. A., Sosnovtsev, S. V., Stephens, T., … Roederer, M. (2025). A broadly protective human antibody for GI genogroup noroviruses. Nature Microbiology. https://doi.org/10.1038/s41564-025-01952-6
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Austin, G. I., Brown Kav, A., ElNaggar, S., Park, H., Biermann, J., Uhlemann, A.-C., Pe’er, I., & Korem, T. (2025). Processing-bias correction with DEBIAS-M improves cross-study generalization of microbiome-based prediction models. Nature Microbiology. https://doi.org/10.1038/s41564-025-01954-4
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Richardson, M., Zhao, S., Lin, L., Sheth, R. U., Qu, Y., Lee, J., Moody, T., Ricaurte, D., Huang, Y., Velez-Cortes, F., Urtecho, G., & Wang, H. H. (2025). SAMPL-seq reveals micron-scale spatial hubs in the human gut microbiome. Nature Microbiology, 10(2), 527–540. https://doi.org/10.1038/s41564-024-01914-4
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Vaysset, H., Meers, C., Cury, J., Bernheim, A., & Sternberg, S. H. (2025). Evolutionary origins of archaeal and eukaryotic RNA-guided RNA modification in bacterial IS110 transposons. Nature Microbiology, 10(1), 20–27. https://doi.org/10.1038/s41564-024-01889-2
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Urso, A., Monk, I. R., Cheng, Y.-T., Predella, C., Wong Fok Lung, T., Theiller, E. M., Boylan, J., Perelman, S., Baskota, S. U., Moustafa, A. M., Lohia, G., Lewis, I. A., Howden, B. P., Stinear, T. P., Dorrello, N. V., Torres, V., & Prince, A. S. (2024). Staphylococcus aureus adapts to exploit collagen-derived proline during chronic infection. Nature Microbiology, 9(10), 2506–2521. https://doi.org/10.1038/s41564-024-01769-9
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Gröschel, M. I., Pérez-Llanos, F. J., Diel, R., Vargas, R., Escuyer, V., Musser, K., Trieu, L., Meissner, J. S., Knorr, J., Klinkenberg, D., Kouw, P., Homolka, S., Samek, W., Mathema, B., van Soolingen, D., Niemann, S., Ahuja, S. D., & Farhat, M. R. (2024). Differential rates of Mycobacterium tuberculosis transmission associate with host–pathogen sympatry. Nature Microbiology, 9(8), 2113–2127. https://doi.org/10.1038/s41564-024-01758-y
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Suryadevara, N., Otrelo-Cardoso, A. R., Kose, N., Hu, Y.-X., Binshtein, E., Wolters, R. M., Greninger, A. L., Handal, L. S., Carnahan, R. H., Moscona, A., Jardetzky, T. S., & Crowe, J. E. (2024). Functional and structural basis of human parainfluenza virus type 3 neutralization with human monoclonal antibodies. Nature Microbiology, 9(8), 2128–2143. https://doi.org/10.1038/s41564-024-01722-w
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Small-Saunders, J. L., Sinha, A., Bloxham, T. S., Hagenah, L. M., Sun, G., Preiser, P. R., Dedon, P. C., & Fidock, D. A. (2024). tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum. Nature Microbiology, 9(6), 1483–1498. https://doi.org/10.1038/s41564-024-01664-3
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Ricaurte, D., Huang, Y., Sheth, R. U., Gelsinger, D. R., Kaufman, A., & Wang, H. H. (2024). High-throughput transcriptomics of 409 bacteria–drug pairs reveals drivers of gut microbiota perturbation. Nature Microbiology, 9(2), 561–575. https://doi.org/10.1038/s41564-023-01581-x
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Monod, M., Brizzi, A., Galiwango, R. M., Ssekubugu, R., Chen, Y., Xi, X., Kankaka, E. N., Ssempijja, V., Abeler-Dörner, L., Akullian, A., Blenkinsop, A., Bonsall, D., Chang, L. W., Dan, S., Fraser, C., Golubchik, T., Gray, R. H., Hall, M., … Jackson, J. C. (2023). Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda. Nature Microbiology, 9(1), 35–54. https://doi.org/10.1038/s41564-023-01530-8
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Kindschuh, W. F., Baldini, F., Liu, M. C., Liao, J., Meydan, Y., Lee, H. H., Heinken, A., Thiele, I., Thaiss, C. A., Levy, M., & Korem, T. (2023). Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature Microbiology, 8(2), 246–259. https://doi.org/10.1038/s41564-022-01293-8
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Hsueh, B. Y., Severin, G. B., Elg, C. A., Waldron, E. J., Kant, A., Wessel, A. J., Dover, J. A., Rhoades, C. R., Ridenhour, B. J., Parent, K. N., Neiditch, M. B., Ravi, J., Top, E. M., & Waters, C. M. (2022). Phage defence by deaminase-mediated depletion of deoxynucleotides in bacteria. Nature Microbiology, 7(8), 1210–1220. https://doi.org/10.1038/s41564-022-01162-4
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Rosenberg, G., Riquelme, S., Prince, A., & Avraham, R. (2022). Immunometabolic crosstalk during bacterial infection. Nature Microbiology, 7(4), 497–507. https://doi.org/10.1038/s41564-022-01080-5
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Thathy, V., & Fidock, D. A. (2021). Malaria parasite beats the heat. Nature Microbiology, 6(9), 1105–1107. https://doi.org/10.1038/s41564-021-00953-5
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