Redenti, A., Im, J., Redenti, B., Li, F., Rouanne, M., Sheng, Z., Sun, W., Gurbatri, C. R., Huang, S., Komaranchath, M., Jang, Y., Hahn, J., Ballister, E. R., Vincent, R. L., Vardoshivilli, A., Danino, T., & Arpaia, N. (2024). Probiotic neoantigen delivery vectors for precision cancer immunotherapy. Nature, 635(8038), 453–461. https://doi.org/10.1038/s41586-024-08033-4

Wang, Z., Fang, Y., Liu, Z., Hao, N., Zhang, H. H., Sun, X., Que, J., & Ding, H. (2024). Adapting nanopore sequencing basecalling models for modification detection via incremental learning and anomaly detection. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-51639-5

Banayan, N. E., Hsu, A., Hunt, J. F., Palmer, A. G., & Friesner, R. A. (2024). Parsing Dynamics of Protein Backbone NH and Side-Chain Methyl Groups using Molecular Dynamics Simulations. Journal of Chemical Theory and Computation, 20(14), 6316–6327. https://doi.org/10.1021/acs.jctc.4c00378

Saecker, R. M., Mueller, A. U., Malone, B., Chen, J., Budell, W. C., Dandey, V. P., Maruthi, K., Mendez, J. H., Molina, N., Eng, E. T., Yen, L. Y., Potter, C. S., Carragher, B., & Darst, S. A. (2024). Early intermediates in bacterial RNA polymerase promoter melting visualized by time-resolved cryo-electron microscopy. Nature Structural & Molecular Biology, 31(11), 1778–1788. https://doi.org/10.1038/s41594-024-01349-9

Naveed, A., Yu, J., Lawson, S., Gao, R., Ni, S., Paulchakrabarti, M., Choudhury, B., Christopher-Hennings, J., Nelson, E., Sheng, Z., Kennedy, M. A., Li, F., & Wang, D. (2024). Receptor binding and immunogenic properties of the receptor binding domain of influenza D virus hemagglutinin-esterase-fusion protein expressed from Escherichia coli. Virology, 597, 110138. https://doi.org/10.1016/j.virol.2024.110138

Bhattacharjee, S., Feng, X., Maji, S., Dadhwal, P., Zhang, Z., Brown, Z. P., & Frank, J. (2024). Time resolution in cryo-EM using a PDMS-based microfluidic chip assembly and its application to the study of HflX-mediated ribosome recycling. Cell, 187(3), 782-796.e23. https://doi.org/10.1016/j.cell.2023.12.027

Acosta-Reyes, F. J., Bhattacharjee, S., Gottesman, M., & Frank, J. (2024). How Dedicated Ribosomes Translate a Leaderless mRNA. Journal of Molecular Biology, 436(4), 168423. https://doi.org/10.1016/j.jmb.2023.168423

Nygaard, R., Graham, C. L. B., Belcher Dufrisne, M., Colburn, J. D., Pepe, J., Hydorn, M. A., Corradi, S., Brown, C. M., Ashraf, K. U., Vickery, O. N., Briggs, N. S., Deering, J. J., Kloss, B., Botta, B., Clarke, O. B., Columbus, L., Dworkin, J., Stansfeld, P. J., Roper, D. I., & Mancia, F. (2023). Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-40483-8

Vincent, R. L., Gurbatri, C. R., Li, F., Vardoshvili, A., Coker, C., Im, J., Ballister, E. R., Rouanne, M., Savage, T., de los Santos-Alexis, K., Redenti, A., Brockmann, L., Komaranchath, M., Arpaia, N., & Danino, T. (2023). Probiotic-guided CAR-T cells for solid tumor targeting. Science, 382(6667), 211–218. https://doi.org/10.1126/science.add7034

Gurbatri, C. R., Arpaia, N., & Danino, T. (2022). Engineering bacteria as interactive cancer therapies. Science, 378(6622), 858–864. https://doi.org/10.1126/science.add9667

Lee, J., Kim, J., Kim, H., Park, H., Kim, J. Y., Kim, E., Yang, Y., Choi, K., & Kim, B. (2022). Constructing multi‐enzymatic cascade reactions for selective production of 6‐bromoindirubin from tryptophan in Escherichia coli. Biotechnology and Bioengineering, 119(10), 2938–2949. Portico. https://doi.org/10.1002/bit.28188

Ketcham, A., Freddolino, P. L., & Tavazoie, S. (2022). Intracellular acidification is a hallmark of thymineless death in E. coli. PLOS Genetics, 18(10), e1010456. https://doi.org/10.1371/journal.pgen.1010456

Harimoto, T., Hahn, J., Chen, Y.-Y., Im, J., Zhang, J., Hou, N., Li, F., Coker, C., Gray, K., Harr, N., Chowdhury, S., Pu, K., Nimura, C., Arpaia, N., Leong, K. W., & Danino, T. (2022). A programmable encapsulation system improves delivery of therapeutic bacteria in mice. Nature Biotechnology, 40(8), 1259–1269. https://doi.org/10.1038/s41587-022-01244-y

Martin, J. A., & Palmer, A. G. (2022). Comparisons of Ribonuclease HI Homologs and Mutants Uncover a Multistate Model for Substrate Recognition. Journal of the American Chemical Society, 144(12), 5342–5349. https://doi.org/10.1021/jacs.1c11897

Hesham, H., Mitchell, A. J., Bergerat, A., Hung, K., & Mitchell, C. M. (2021). Impact of vaginal douching products on vaginal Lactobacillus, Escherichia coli and epithelial immune responses. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-02426-5