Proteome

Displaying 1 - 8 of 8CSV
Jiang, W., Jaehnig, E. J., Liao, Y., Shi, Z., Yaron-Barir, T. M., Johnson, J. L., Cantley, L. C., & Zhang, B. (2025). Deciphering the dark cancer phosphoproteome using machine-learned co-regulation of phosphosites. Nature Communications, 16(1). https://doi.org/10.1038/s41467-025-57993-2
Publication Date
Klomp, J. E., Diehl, J. N., Klomp, J. A., Edwards, A. C., Yang, R., Morales, A. J., Taylor, K. E., Drizyte-Miller, K., Bryant, K. L., Schaefer, A., Johnson, J. L., Huntsman, E. M., Yaron, T. M., Pierobon, M., Baldelli, E., Prevatte, A. W., Barker, N. K., Herring, L. E., Petricoin, E. F., … Stalnecker, C. A. (2024). Determining the ERK-regulated phosphoproteome driving KRAS-mutant cancer. Science, 384(6700). https://doi.org/10.1126/science.adk0850
Publication Date
Zhao, H., Petrey, D., Murray, D., & Honig, B. (2024). ZEPPI: Proteome-scale sequence-based evaluation of protein–protein interaction models. Proceedings of the National Academy of Sciences, 121(21). https://doi.org/10.1073/pnas.2400260121
Publication Date
Ross, A. B., Gorhe, D., Kim, J. K., Hodapp, S., DeVine, L., Chan, K. M., Chio, I. I. C., Jovanovic, M., & Ayres Pereira, M. (2024). Systematic analysis of proteome turnover in an organoid model of pancreatic cancer by dSILO. Cell Reports Methods, 4(5), 100760. https://doi.org/10.1016/j.crmeth.2024.100760
Publication Date
Makepeace, K. A. T., Rookyard, A. W., Das, L., Vardarajan, B. N., Chakrabarty, J. K., Jain, A., Kang, M. S., Werth, E. G., Reyes‐Dumeyer, D., Zerlin‐Esteves, M., Honig, L. S., Mayeux, R., & Brown, L. M. (2024). Data‐Independent Acquisition and Label‐Free Quantification for Quantitative Proteomics Analysis of Human Cerebrospinal Fluid. Current Protocols, 4(3). Portico. https://doi.org/10.1002/cpz1.1014
Publication Date
Petrey, D., Zhao, H., Trudeau, S. J., Murray, D., & Honig, B. (2023). PrePPI: A Structure Informed Proteome-wide Database of Protein–Protein Interactions. Journal of Molecular Biology, 435(14), 168052. https://doi.org/10.1016/j.jmb.2023.168052
Publication Date
Johnson, J. L., Yaron, T. M., Huntsman, E. M., Kerelsky, A., Song, J., Regev, A., Lin, T.-Y., Liberatore, K., Cizin, D. M., Cohen, B. M., Vasan, N., Ma, Y., Krismer, K., Robles, J. T., van de Kooij, B., van Vlimmeren, A. E., Andrée-Busch, N., Käufer, N. F., Dorovkov, M. V., … Cantley, L. C. (2023). An atlas of substrate specificities for the human serine/threonine kinome. Nature, 613(7945), 759–766. https://doi.org/10.1038/s41586-022-05575-3
Publication Date
Lee, M., Woo, J., Kim, D.-H., Yang, Y.-M., Lee, E. Y., Kim, J.-H., Kang, S.-G., Shim, J.-K., & Park, J.-Y. (2021). A novel paper MAP method for rapid high resolution histological analysis. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-02632-1
Publication Date