Szikszai, M., Magnus, M., Sanghi, S., Kadyan, S., Bouatta, N., & Rivas, E. (2024). RNA3DB: A structurally-dissimilar dataset split for training and benchmarking deep learning models for RNA structure prediction. Journal of Molecular Biology, 436(17), 168552. https://doi.org/10.1016/j.jmb.2024.168552

Sampson, J. M., Cannon, D. A., Duan, J., Epstein, J. C. K., Sergeeva, A. P., Katsamba, P. S., Mannepalli, S. M., Bahna, F. A., Adihou, H., Guéret, S. M., Gopalakrishnan, R., Geschwindner, S., Rees, D. G., Sigurdardottir, A., Wilkinson, T., Dodd, R. B., De Maria, L., Mobarec, J. C., Shapiro, L., … Wang, L. (2024). Robust Prediction of Relative Binding Energies for Protein–Protein Complex Mutations Using Free Energy Perturbation Calculations. Journal of Molecular Biology, 436(16), 168640. https://doi.org/10.1016/j.jmb.2024.168640

Lee, Y., Gu, S., & Al-Hashimi, H. M. (2024). Insights into the A-C Mismatch Conformational Ensemble in Duplex DNA and its Role in Genetic Processes through a Structure-based Review. Journal of Molecular Biology, 436(18), 168710. https://doi.org/10.1016/j.jmb.2024.168710

Ahmed, A., Kato, N., & Gautier, J. (2024). Replication-Independent ICL Repair: From Chemotherapy to Cell Homeostasis. Journal of Molecular Biology, 436(13), 168618. https://doi.org/10.1016/j.jmb.2024.168618

Acosta-Reyes, F. J., Bhattacharjee, S., Gottesman, M., & Frank, J. (2024). How Dedicated Ribosomes Translate a Leaderless mRNA. Journal of Molecular Biology, 436(4), 168423. https://doi.org/10.1016/j.jmb.2023.168423

Maurina, S. F., O’Sullivan, J. P., Sharma, G., Pineda Rodriguez, D. C., MacFadden, A., Cendali, F., Henen, M. A., Vögeli, B., Kieft, J. S., Glasgow, A., & Steckelberg, A.-L. (2023). An Evolutionarily Conserved Strategy for Ribosome Binding and Host Translation Inhibition by β-coronavirus Non-structural Protein 1. Journal of Molecular Biology, 435(20), 168259. https://doi.org/10.1016/j.jmb.2023.168259

Sergeeva, A. P., Katsamba, P. S., Liao, J., Sampson, J. M., Bahna, F., Mannepalli, S., Morano, N. C., Shapiro, L., Friesner, R. A., & Honig, B. (2023). Free Energy Perturbation Calculations of Mutation Effects on SARS-CoV-2 RBD::ACE2 Binding Affinity. Journal of Molecular Biology, 435(15), 168187. https://doi.org/10.1016/j.jmb.2023.168187

Petrey, D., Zhao, H., Trudeau, S. J., Murray, D., & Honig, B. (2023). PrePPI: A Structure Informed Proteome-wide Database of Protein–Protein Interactions. Journal of Molecular Biology, 435(14), 168052. https://doi.org/10.1016/j.jmb.2023.168052

Young, B. D., Cook, M. E., Costabile, B. K., Samanta, R., Zhuang, X., Sevdalis, S. E., Varney, K. M., Mancia, F., Matysiak, S., Lattman, E., & Weber, D. J. (2022). Binding and Functional Folding (BFF): A Physiological Framework for Studying Biomolecular Interactions and Allostery. Journal of Molecular Biology, 434(23), 167872. https://doi.org/10.1016/j.jmb.2022.167872

Bailey, E. J., Gottesman, M. E., & Gonzalez, R. L. (2022). NusG-mediated Coupling of Transcription and Translation Enhances Gene Expression by Suppressing RNA Polymerase Backtracking. Journal of Molecular Biology, 434(2), 167330. https://doi.org/10.1016/j.jmb.2021.167330