Bioinformatics
Displaying 1 - 9 of 9
Martí, J. M., Hsu, C., Rochereau, C., Xu, C., Blazejewski, T., Nisonoff, H., Leonard, S. P., Kang-Yun, C. S., Chlebek, J., Ricci, D. P., Park, D., Wang, H., Listgarten, J., Jiao, Y., & Allen, J. E. (2024). GENTANGLE: integrated computational design of gene entanglements. Bioinformatics, 40(7). https://doi.org/10.1093/bioinformatics/btae380
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Columbia Affiliation
Cai, L., & Anastassiou, D. (2024). CASCC: a co-expression-assisted single-cell RNA-seq data clustering method. Bioinformatics, 40(5). https://doi.org/10.1093/bioinformatics/btae283
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Columbia Affiliation
Xu, H., Wang, T., Miao, Y., Qian, M., Yang, Y., & Wang, S. (2024). MK-BMC: a Multi-Kernel framework with Boosted distance metrics for Microbiome data for Classification. Bioinformatics, 40(1). https://doi.org/10.1093/bioinformatics/btad757
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Columbia Affiliation
Klein, H.-U. (2023). demuxmix: demultiplexing oligonucleotide-barcoded single-cell RNA sequencing data with regression mixture models. Bioinformatics, 39(8). https://doi.org/10.1093/bioinformatics/btad481
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Columbia Affiliation
Caufield, J. H., Putman, T., Schaper, K., Unni, D. R., Hegde, H., Callahan, T. J., Cappelletti, L., Moxon, S. A. T., Ravanmehr, V., Carbon, S., Chan, L. E., Cortes, K., Shefchek, K. A., Elsarboukh, G., Balhoff, J., Fontana, T., Matentzoglu, N., Bruskiewich, R. M., Thessen, A. E., … Reese, J. T. (2023). KG-Hub—building and exchanging biological knowledge graphs. Bioinformatics, 39(7). https://doi.org/10.1093/bioinformatics/btad418
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Columbia Affiliation
Tian, P., Yao, M., Huang, T., & Liu, Z. (2022). CoxMKF: a knockoff filter for high-dimensional mediation analysis with a survival outcome in epigenetic studies. Bioinformatics, 38(23), 5229–5235. https://doi.org/10.1093/bioinformatics/btac687
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Columbia Affiliation
Oluwayiose, O. A., Wu, H., Gao, F., Baccarelli, A. A., Sofer, T., & Pilsner, J. R. (2022). Aclust2.0: a revamped unsupervised R tool for Infinium methylation beadchips data analyses. Bioinformatics, 38(20), 4820–4822. https://doi.org/10.1093/bioinformatics/btac583
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Columbia Affiliation
Skok Gibbs, C., Jackson, C. A., Saldi, G.-A., Tjärnberg, A., Shah, A., Watters, A., De Veaux, N., Tchourine, K., Yi, R., Hamamsy, T., Castro, D. M., Carriero, N., Gorissen, B. L., Gresham, D., Miraldi, E. R., & Bonneau, R. (2022). High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0. Bioinformatics, 38(9), 2519–2528. https://doi.org/10.1093/bioinformatics/btac117
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Columbia Affiliation
Yan, Q., Forno, E., Celedón, J. C., Chen, W., & Weeks, D. E. (2021). CHIT: an allele-specific method for testing the association between molecular quantitative traits and phenotype–genotype interaction. Bioinformatics, 37(24), 4764–4770. https://doi.org/10.1093/bioinformatics/btab554
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Columbia Affiliation
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