Teasdale, C. A., Zimba, R., Low, A., Nuwagaba-Biribonwoha, H., Ndagije, F., Tenthani, L., Mugurungi, O., Kreniske, P., & Abrams, E. J. (2025). Evidence from two rounds of Population HIV Impact Assessments of progress towards HIV epidemic control in adolescents aged 15–19 years in Eswatini, Lesotho, Malawi, and Zimbabwe: a cross-sectional study. The Lancet Global Health, 13(7), e1221–e1229. https://doi.org/10.1016/s2214-109x(25)00106-8

van Boven, M., van Dorp, C. H., Westerhof, I., Jaddoe, V., Heuvelman, V., Duijts, L., Fourie, E., Sluiter-Post, J., van Houten, M. A., Badoux, P., Euser, S., Herpers, B., Eggink, D., de Hoog, M., Boom, T., Wildenbeest, J., Bont, L., Rozhnova, G., Bonten, M. J., … Bruijning-Verhagen, P. (2024). Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study. PLOS Computational Biology, 20(1), e1011832. https://doi.org/10.1371/journal.pcbi.1011832

Nodari, R., Perini, M., Fois, L., Sterzi, L., Luconi, E., Vaglienti, F., Bandi, C., Biganzoli, E., Galli, M., & Comandatore, F. (2023). Computational protocol to perform a spatiotemporal reconstruction of an epidemic. STAR Protocols, 4(4), 102548. https://doi.org/10.1016/j.xpro.2023.102548

Chen, J., Zhang, W., Wang, Y., & Yang, W. (2023). Determinants of measles persistence in Beijing, China: A modelling study. Epidemiology and Infection, 151. https://doi.org/10.1017/s0950268823001322

Webster, J. L., Rafalko, N., Thorpe, L. E., Duncan, D. T., Gracely, E. J., & Goldstein, N. D. (2023). Alignment of Ending the HIV Epidemic Priority Jurisdictions With Availability of HIV Service Organizations: An Ecological Study. AIDS Education and Prevention, 35(4), 320–331. https://doi.org/10.1521/aeap.2023.35.4.320

Yang, W., & Shaman, J. (2023). Development of Accurate Long-lead COVID-19 Forecast. PLOS Computational Biology, 19(7), e1011278. https://doi.org/10.1371/journal.pcbi.1011278

Barros-Sierra, D., Zepeda-Tello, R., Tamayo-Ortiz, M., Gutiérrez-Díaz, H. O., Pérez-Chávez, V. A., Rosa-Parra, J. A., Nieto-Barajas, L. E., Méndez-Aranda, M., Herrera-Montalvo, L. A., & Hernández-Ávila, M. (2023). SARS-CoV-2 seroprevalence and respiratory disease disability claims in Mexico City Metropolitan Area. Salud Pública de México, 65(4, jul-ago), 334–343. https://doi.org/10.21149/14545

Sun, H.-C., Pei, S., Wang, L., Sun, Y.-Y., & Xu, X.-K. (2023). The Impact of Spring Festival Travel on Epidemic Spreading in China. Viruses, 15(7), 1527. https://doi.org/10.3390/v15071527

Zeng, Q., Yu, X., Ni, H., Xiao, L., Xu, T., Wu, H., Chen, Y., Deng, H., Zhang, Y., Pei, S., Xiao, J., & Guo, P. (2023). Dengue transmission dynamics prediction by combining metapopulation networks and Kalman filter algorithm. PLOS Neglected Tropical Diseases, 17(6), e0011418. https://doi.org/10.1371/journal.pntd.0011418

Ryu, S., Han, C., Ali, S. T., Achangwa, C., Yang, B., & Pei, S. (2023). Association of public health and social measures on the hand-foot-mouth epidemic in South Korea. Journal of Infection and Public Health, 16(6), 859–864. https://doi.org/10.1016/j.jiph.2023.03.029

Restar, A., Minalga, B. J., Quilantang, Ma. I., Adamson, T., Dusic, E., van der Merwe, L.-A., Millet, G., Rosadiño, D., Laguing, T., Lett, E., Everhart, A., Phillips, G., Janamnuaysook, R., Seekaew, P., Baker, K., Ashley, F., Wickersham, J., Wallace, S. E., Operario, D., & Gamarel, K. E. (2023). Mapping Community-Engaged Implementation Strategies with Transgender Scientists, Stakeholders, and Trans-Led Community Organizations. Current HIV/AIDS Reports, 20(3), 160–169. https://doi.org/10.1007/s11904-023-00656-y

Zhang, C., Zhang, X., Bai, Y., Lau, E. H. Y., & Pei, S. (2022). The Structural Identifiability of a Humidity-Driven Epidemiological Model of Influenza Transmission. Viruses, 14(12), 2795. https://doi.org/10.3390/v14122795

Zhang, B., Huang, W., Pei, S., Zeng, J., Shen, W., Wang, D., Wang, G., Chen, T., Yang, L., Cheng, P., Wang, D., Shu, Y., & Du, X. (2022). Mechanisms for the circulation of influenza A(H3N2) in China: A spatiotemporal modelling study. PLOS Pathogens, 18(12), e1011046. https://doi.org/10.1371/journal.ppat.1011046

Brown, T. S., Robinson, D. A., Buckee, C. O., & Mathema, B. (2022). Connecting the dots: understanding how human mobility shapes TB epidemics. Trends in Microbiology, 30(11), 1036–1044. https://doi.org/10.1016/j.tim.2022.04.005

Du, Z., Wang, C., Liu, C., Bai, Y., Pei, S., Adam, D. C., Wang, L., Wu, P., Lau, E. H. Y., & Cowling, B. J. (2022). Systematic review and meta‐analyses of superspreading of SARS‐CoV‐2 infections. Transboundary and Emerging Diseases, 69(5). Portico. https://doi.org/10.1111/tbed.14655

Jones, J., Knox, J., Meanley, S., Yang, C., Lounsbury, D. W., Huang, T. T., Bauermeister, J., Gonzalez-Hernandez, G., Frye, V., Grov, C., Patel, V., Baral, S. D., Sullivan, P. S., & Schwartz, S. R. (2022). Explorations of the Role of Digital Technology in HIV-Related Implementation Research: Case Comparisons of Five Ending the HIV Epidemic Supplement Awards. JAIDS Journal of Acquired Immune Deficiency Syndromes, 90(S1), S226–S234. https://doi.org/10.1097/qai.0000000000002983

Mitchell, K. M., Maheu-Giroux, M., Dimitrov, D., Moore, M., Hughes, J. P., Donnell, D., Beyrer, C., El-Sadr, W. M., Cohen, M. S., & Boily, M. C. (2021). How Can Progress Toward Ending the Human Immunodeficiency Virus Epidemic in the United States Be Monitored? Clinical Infectious Diseases, 75(1), 163–169. https://doi.org/10.1093/cid/ciab976

Schneider, T., Dunbar, O. R. A., Wu, J., Böttcher, L., Burov, D., Garbuno-Inigo, A., Wagner, G. L., Pei, S., Daraio, C., Ferrari, R., & Shaman, J. (2022). Epidemic management and control through risk-dependent individual contact interventions. PLOS Computational Biology, 18(6), e1010171. https://doi.org/10.1371/journal.pcbi.1010171

Philbin, M. M., & Perez-Brumer, A. (2022). Promise, perils and cautious optimism: the next frontier in long-acting modalities for the treatment and prevention of HIV. Current Opinion in HIV and AIDS, 17(2), 72–88. https://doi.org/10.1097/coh.0000000000000723

Lulseged, S., Melaku, Z., Habteselassie, A., West, C. A., Gelibo, T., Belete, W., Tefera, F., Farahani, M., Demissie, M., Teferi, W., Abdella, S., Birhanu, S., & Ross, C. E. (2022). Progress towards controlling the HIV epidemic in urban Ethiopia: Findings from the 2017–2018 Ethiopia population-based HIV impact assessment survey. PLOS ONE, 17(2), e0264441. https://doi.org/10.1371/journal.pone.0264441

El-Bassel, N., Mukherjee, T. I., Stoicescu, C., Starbird, L. E., Stockman, J. K., Frye, V., & Gilbert, L. (2022). Intertwined epidemics: progress, gaps, and opportunities to address intimate partner violence and HIV among key populations of women. The Lancet HIV, 9(3), e202–e213. https://doi.org/10.1016/s2352-3018(21)00325-8

Pollett, S., Johansson, M. A., Reich, N. G., Brett-Major, D., Del Valle, S. Y., Venkatramanan, S., Lowe, R., Porco, T., Berry, I. M., Deshpande, A., Kraemer, M. U. G., Blazes, D. L., Pan-ngum, W., Vespigiani, A., Mate, S. E., Silal, S. P., Kandula, S., Sippy, R., Quandelacy, T. M., … Rivers, C. (2021). Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines. PLOS Medicine, 18(10), e1003793. https://doi.org/10.1371/journal.pmed.1003793

Eaton, J. W., Dwyer‐Lindgren, L., Gutreuter, S., O’Driscoll, M., Stevens, O., Bajaj, S., Ashton, R., Hill, A., Russell, E., Esra, R., Dolan, N., Anifowoshe, Y. O., Woodbridge, M., Fellows, I., Glaubius, R., Haeuser, E., Okonek, T., Stover, J., Thomas, M. L., … Shiraishi, R. W. (2021). Naomi: a new modelling tool for estimating HIV epidemic indicators at the district level in sub‐Saharan Africa. Journal of the International AIDS Society, 24(S5). Portico. https://doi.org/10.1002/jia2.25788