Semantic Web and Ontology Development

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Matentzoglu, N., Bello, S. M., Stefancsik, R., Alghamdi, S. M., Anagnostopoulos, A. V., Balhoff, J. P., Balk, M. A., Bradford, Y. M., Bridges, Y., Callahan, T. J., Caufield, H., Cuzick, A., Carmody, L. C., Caron, A. R., de Souza, V., Engel, S. R., Fey, P., Fisher, M., Gehrke, S., … Osumi-Sutherland, D. (2025). The Unified Phenotype Ontology : a framework for cross-species integrative phenomics. GENETICS, 229(3). https://doi.org/10.1093/genetics/iyaf027
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Callahan, T. J., Tripodi, I. J., Stefanski, A. L., Cappelletti, L., Taneja, S. B., Wyrwa, J. M., Casiraghi, E., Matentzoglu, N. A., Reese, J., Silverstein, J. C., Hoyt, C. T., Boyce, R. D., Malec, S. A., Unni, D. R., Joachimiak, M. P., Robinson, P. N., Mungall, C. J., Cavalleri, E., Fontana, T., … Hunter, L. E. (2024). An open source knowledge graph ecosystem for the life sciences. Scientific Data, 11(1). https://doi.org/10.1038/s41597-024-03171-w
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Callahan, T. J., Stefanski, A. L., Wyrwa, J. M., Zeng, C., Ostropolets, A., Banda, J. M., Baumgartner, W. A., Boyce, R. D., Casiraghi, E., Coleman, B. D., Collins, J. H., Deakyne Davies, S. J., Feinstein, J. A., Lin, A. Y., Martin, B., Matentzoglu, N. A., Meeker, D., Reese, J., Sinclair, J., … Kahn, M. G. (2023). Ontologizing health systems data at scale: making translational discovery a reality. Npj Digital Medicine, 6(1). https://doi.org/10.1038/s41746-023-00830-x
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