OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization

Ahdritz, G., Bouatta, N., Floristean, C., Kadyan, S., Xia, Q., Gerecke, W., O’Donnell, T. J., Berenberg, D., Fisk, I., Zanichelli, N., Zhang, B., Nowaczynski, A., Wang, B., Stepniewska-Dziubinska, M. M., Zhang, S., Ojewole, A., Guney, M. E., Biderman, S., Watkins, A. M., … AlQuraishi, M. (2024). OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature Methods, 21(8), 1514–1524. https://doi.org/10.1038/s41592-024-02272-z
Authors:
Gustaf Ahdritz
Christina Floristean
Sachin Kadyan
Qinghui Xia
Mohammed AlQuraishi
Nazim Bouatta
William Gerecke
Peter K. Sorger
Timothy J. O'Donnell
Daniel Berenberg
Ian Fisk
Niccolo Zanichelli
Bo Zhang
Arkadiusz Nowaczynski
Bei Wang
Marta M. Stepniewska-Dziubinska
Shang Zhang
Adegoke Ojewole
Murat Efe Guney
Pablo Ribalta Lorenzo
Stella Biderman
Andrew M. Watkins
Stephen Ra
Richard Bonneau
Lucas Nivon
Brian Weitzner
Yih-En Andrew Ban
Shiyang Chen
Zhao Zhang
Minjia Zhang
Conglong Li
Shuaiwen Leon Song
Yuxiong He
Emad Mostaque
Affiliated Authors:
Gustaf Ahdritz
Christina Floristean
Sachin Kadyan
Qinghui Xia
Mohammed AlQuraishi
Columbia Affiliation:
elink
Publication Type:
Article
Unique ID:
10.1038/s41592-024-02272-z
PMID:
38744917
DOI:
10.1038/s41592-024-02272-z
Journal:
Nature Methods
Publication Date:
Data Source:
Web of Science
Source Link:
View Web of Science Record

Record Created: